HDF version 4.2.10 released on 2014-02-09 ============================================== INTRODUCTION This document describes the differences between HDF 4.2.9 and HDF 4.2.10. It is written for people who are familiar with previous releases of HDF and wish to migrate to HDF 4.2.10. The HDF 4.2.10 documentation can be found on the The HDF Group's website at: http://www.hdfgroup.org/doc.html Previous versions of the documentation are available from the FTP server: ftp://ftp.hdfgroup.org/HDF/Documentation/ First-time HDF users are encouraged to read the HDF FAQ, which can be reached from the HDF product home page: http://hdfgroup.org/products/hdf4/ If you have any questions or comments, please see the HDF Support page: http://hdfgroup.org/services/support.html CONTENTS - New features and changes -- Configuration - Support for new platforms and compilers - Bugs fixed since HDF 4.2.9 -- Configuration -- Library -- Utilities - Documentation - Platforms tested - Known problems New features and changes ======================== Configuration ============= CMake - Added support to create dmg bundles on Mac. (ADB 2013/9/12) CMake - Added support to use Windows /MT option. (ADB 2013/6/10) Support for new platforms and compilers ======================================= - Visual Studio 2012 w/ Intel Fortran 13 on Windows 7 and Windows 8 - Mac OS X Mavericks with clang and gfortran Bugs fixed since HDF 4.2.9 ========================= Configuration ============= - Removed the requirement of yacc/lex like tools. The ncgenXXX.* files generated files from yacc and lex input files are pre-created in the source code to build the ncgen tool. The msoft*.[ch] files were for Windows build but was out of dated. Cmake uses the pre-created files instead. See known problem below. (AKC 2014/02/02 HDFFR-1419) - Removed old Macintosh platform codes that are not used any more. (AKC 2014/01/21 HDFFR-1340) - Changed Mac platforms to use the Apple supported clang compiler as the default C compiler. (AKC 2014/01/15 HDFFR-1318) - Removed the following individual platform specific files and have them to be produced by configure using corresponding *.in files. mfhdf/libsrc/config/netcdf-XXX.h by mfhdf/libsrc/netcdf.h.in mfhdf/fortran/config/ftest-XXX.f by mfhdf/fortran/ftest.f.in mfhdf/fortran/config/jackets-XXX.c by mfhdf/fortran/jackets.c.in mfhdf/fortran/config/netcdf-XXX.inc by mfhdf/fortran/netcdf.inc.in (AKC 2013/12/31 HDFFR-1320/476) - The following platforms are old and no longer available. Removed their support code from the configure files: alpha, convex, dec, fujivp, hpux, ia64, irix32, irix4, irix5, irix6, mac, solarisx86, sun, t3e, unicos. (AKC 2013/12/26 HDFFR-1320) - Removed -Xc (strict ansi standard) from the default CFLAGS of Solaris since the latest Sun Compiler version 5.11 and 5.12 have a conflict with the system header file. Since the current versions of C compiler should be at least ANSI (aka C89) compliant, the removal of -Xc should be safe. This also fixes a previous known problem of needing to use -xc99 to build HDF4. (AKC 2013/12/20 HDFFR-1361) - CMake - Changed name of TGZ_PATH to TGZPATH. (ADB 2013/9/12) - CMake - Removed extra flag POSIX_SOURCE as it caused failures on Apple Mac builds. (ADB 2013/8/7) Library ========= - SDsetblocksize and VSsetblocksize would not change the block size if the sds/vdata did not use linked-block before it was closed. The problem is now fixed. (BMR 2013/1/15 - HDFFR-1357) - Patches from user are applied to the C test to correct an overflow variable and to the Fortran source for some missing declarations. (BMR/EP 2014/1/15 - HDFFR-1367) - Examples GR_write_chunks.c and GR_read_chunks.c were added. (BMR 2014/12/30 - HDFFR-1402) Utilities ========= - ncdump displayed garbage in place of fill-values when a variable had unlimited dimension and had been written with less number of records than the largest number of records in the file. This is now fixed. (BMR 2014/12/16 - HDFFR-1390) Documentation ============= - None Platforms tested ================ This version has been tested in the following platforms: Linux 2.6.32-358.18.1 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3) .el6.ppc64 #1 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3) SMP ppc64 GNU/Linux IBM XL Fortran for Linux, V13.1 (64-bit mode) (ostrich) Linux 2.6.18-308.13.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52) SMP i686 i386 GNU Fortran (GCC) 4.1.2 20080704 (jam) (Red Hat 4.1.2-52) pgcc and pgf90 13.7-0 32-bit target on x86 Linux -tp penryn Intel(R) C Compiler, Version 13.1.3 20130607 Intel(R) Fortran Compiler, Version 13.1.3 Linux 2.6.18-308.24.1.el5 #1 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-54) SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.1.2 20080704 (koala) (Red Hat 4.1.2-54) icc (ICC) 13.1.3 20130607 ifort (IFORT) 13.1.3 20130607 pgcc and pgf90 13.7-0 64-bit target on x86-64 Linux -tp nehalem Linux 2.6.32-431.el6.x86_64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) #1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 4.4.7 20120313 (platypus) (Red Hat 4.4.7-4) icc (ICC) 13.1.3 20130607 ifort (IFORT) 13.1.3 20130607 SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc 2011/11/16 (emu) (see "Known problem" section) Sun Fortran 95 8.6 SunOS_sparc 2011/11/16 Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake) Visual Studio 2010 w/ Intel Fortran 12 (cmake) Visual Studio 2012 w/ Intel Fortran 13 (cmake) Cygwin(CYGWIN_NT-6.1 1.7.25(0.270/5/3) gcc(4.7.3) compiler and gfortran) (cmake and autotools) Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake) Visual Studio 2010 w/ Intel Fortran 12 (cmake) Visual Studio 2012 w/ Intel Fortran 13 (cmake) Windows 8 Visual Studio 2012 w/ Intel Fortran 13 (cmake) Windows 8 x64 Visual Studio 2012 w/ Intel Fortran 13 (cmake) Mac OS X Intel 10.6.8 Apple clang version 1.7 from Xcode 3.2.6 Darwin 10.8.0 gfortran GNU Fortran (GCC) 4.6.2 (fred) icc and ifort Version 12.1.6 20120928 Mac OS X 10.7.5 Apple clang version 3.0 from Xcode 4.6.1 Darwin 11.4.2 gfortran GNU Fortran (GCC) 4.6.2 (duck) icc and ifort Version 13.0.3 20130606 Mac OS X 10.8.5 Apple clang version 4.2 from Xcode 4.6.1 Darwin 12.2.0 gfortran GNU Fortran (GCC) 4.6.2 (wren) icc and ifort Version 13.0.3 20130606 Mac OS X 10.8.5 Apple clang version 5.0 from Xcode 5.0.2 Darwin 12.2.0 gfortran GNU Fortran (GCC) 4.6.2 (swallow,kite) icc and ifort Version 14.0.1 20131010 Mac OS X 10.9.1 Apple LLVM version 5.0 (clang-500.2.79) Darwin 13.0.0 (based on LLVM 3.3svn) gfortran GNU Fortran (GCC) 4.6.2 Debian7.2.0 3.2.0-4-amd64 #1 SMP Debian 3.2.51-1 x86_64 GNU/Linux gcc (Debian 4.7.2-5) 4.7.2 GNU Fortran (Debian 4.7.2-5) 4.7.2 (cmake and autotools) Fedora20 3.11.10-301.fc20.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) GNU Fortran (GCC) 4.8.2 20130603 (Red Hat 4.8.2-7) (cmake and autotools) SUSE 13.1 3.11.6-4-desktop #1 SMP PREEMPT x86_64 x86_64 x86_64 GNU/Linux gcc (SUSE Linux) 4.8.1 GNU Fortran (SUSE Linux) 4.8.1 (cmake and autotools) Ubuntu 13.10 3.11.0-13-generic #20-Ubuntu SMP x86_64 GNU/Linux gcc (Ubuntu/Linaro 4.8.1-10ubuntu8) 4.8.1 GNU Fortran (Ubuntu/Linaro 4.8.1-10ubuntu8) 4.8.1 (cmake and autotools) Known problems ============== o CMake builds in Windows uses the same pre-generated ncgen*.[ch] files from the yacc/lex input files. The generated file, ncgenyy.c, uses the header file that Windows does not support. This must be blocked out in order for Windows to use it. (AKC 2014-02-03 HDFFR-1424). o CMake "make install" fails installing the tools: Use CPack to create an install package. ADB - 2014/02/03 o CMake does not install these man pages: hdf.1, ncdump.1, ncgen.1 AKC/BMR - 2014/02/02 o For Mac OS X 10.7 Lion and on 10.8 Mountain Lion, several tests fail with GCC, Intel and Clang compilers. Currently, this situation is detected and -O0 level optimization is used. We will work on the issue for the next release. (HDFFR-1318,1358) EIP - 2013/02/05 o On IBM PowerPC 64, hdftest fails when gcc 4.4.6 is used with -O3 optimization level. o When building in AIX systems, if CC is xlc with -qlanglvl=ansi, configure will fail when checking for the jpeglib.h header due to the duplicated macro definition of HAVE_STDLIB_H. This is because some newer builds of the jpeg library have HAVE_STDLIB_H defined in the jconfig.h header file. Without the -qlanglvl=ansi, some older xlc versions (e.g., V7.0) still fail, but newer xlc versions (e.g., V9.0) pass. AKC - 2010/02/17 o When building on Linux/UNIX platforms, the szip shared library files must be in the system library path. This can be done by adding a link to the libsz.* files in the /usr/lib folder or by adding the library location to the LD_LIBRARY_PATH environment variable. Ex. export LD_LIBRARY_PATH=path_to_szip_lib:$LD_LIBRARY_PATH Optionally, one can use the static szip library files by adding '-static' to the CFLAGS environment variable. o Existing data written by an HDF4 Library prior to HDF 4.2r2: When a one-dimensional SDS and a dimension scale have the same name, subsequent accesses to the dimension scale or to the SDS might produce undesired results because the libraries could not distinguish between the two objects. In the case of writing, data might even be corrupted. For example, SDS data might be written to a dimension variable or vice versa. (bugzilla #624) HDF4 Library Releases 4.2r2 and later make a distinction between an SDS and a dimension variable. However, as with older versions, these recent versions are unable to detect such conflicts in files created by earlier releases. It is therefore STRONGLY recommended to check for such name duplication before working with data created with a pre-4.2r2 library. The functions SDgetnumvars_byname and SDnametoindices are provided to help detect such name conflicts and select the correct object to access, respectively; see the HDF Reference Manual entries for further details. FB - 2009/01/26 BMR - revised 2011/06/24 o N-bit compression is not supported with Fortran APIs. o Using both fill-value and compression on SD datasets does not work. o When using PGI compilers, make sure that the JPEG library is also compiled with a PGI C compiler; linking with a JPEG library built with gcc causes JPEG library tests to fail. To bypass the problem: x Set LIBS flag to $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a where $PGI_JPEG_INSTALL_DIR points to the installation directory for the PGI-compiled JPEG library: setenv LIBS $PGI_JPEG_INSTALL_DIR/lib/libjpeg.a x Use the --with-jpeg=$PGI_JPEG_INSTALL_DIR configure flag to configure with the PGI-compiled JPEG library: ./configure --with-jpeg=$PGI_JPEG_INSTALL_DIR --with-zlib.... o In order for the API SDgetdatasize to get the correct compressed size of the data, the dataset needs to be closed (SDendaccess) or read (SDreaddata) after being written and before SDgetdatasize is called. BMR - 2008/11/22