Serialized Form


Package ncsa.hdf.view

Class ncsa.hdf.view.Chart extends javax.swing.JDialog implements Serializable

Serialized Fields

data

double[][] data
the data values of line points or histogram


chartP

ncsa.hdf.view.Chart.ChartPanel chartP
Panel that draws plot of data values.


numberOfPoints

int numberOfPoints
number of data points


chartStyle

int chartStyle
the style of chart: histogram or line


ylabel

java.lang.String ylabel
the text label of Y axis


xlabel

java.lang.String xlabel
the text label of X axis


ymax

double ymax
the maximum value of the Y axis


ymin

double ymin
the minumum value of the Y axis


xmax

double xmax
the maximum value of the X axis


xmin

double xmin
the minumum value of the X axis


lineLabels

java.lang.String[] lineLabels
line labels


lineColors

java.awt.Color[] lineColors
line colors


xwidth

int xwidth
maximum width of the x labels


numberOfLines

int numberOfLines
number of lines


xData

double[] xData

isInteger

boolean isInteger
True if the original data is integer (byte, short, integer, long).


format

java.text.DecimalFormat format

Class ncsa.hdf.view.DataOptionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

viewer

ViewManager viewer
The main HDFView.


dataset

Dataset dataset
the selected dataset/image


rank

int rank
the rank of the dataset/image


start

long[] start
the starting point of selected subset


dims

long[] dims
the sizes of all dimensions


selected

long[] selected
the selected sizes of all dimensions


stride

long[] stride
the stride


selectedIndex

int[] selectedIndex
the indices of the selected dimensions.


currentIndex

int[] currentIndex

spreadsheetButton

javax.swing.JRadioButton spreadsheetButton

imageButton

javax.swing.JRadioButton imageButton

charButton

javax.swing.JRadioButton charButton

swapOnlyButton

javax.swing.JRadioButton swapOnlyButton

choiceTextView

javax.swing.JComboBox choiceTextView

choiceTableView

javax.swing.JComboBox choiceTableView

choiceImageView

javax.swing.JComboBox choiceImageView

choicePalette

javax.swing.JComboBox choicePalette

choices

javax.swing.JComboBox[] choices

isSelectionCancelled

boolean isSelectionCancelled

isTrueColorImage

boolean isTrueColorImage

isText

boolean isText

isH5

boolean isH5

maxLabels

javax.swing.JLabel[] maxLabels

startFields

javax.swing.JTextField[] startFields

endFields

javax.swing.JTextField[] endFields

strideFields

javax.swing.JTextField[] strideFields

fieldList

javax.swing.JList fieldList

toolkit

java.awt.Toolkit toolkit

navigator

ncsa.hdf.view.DataOptionDialog.SubsetNavigator navigator

numberOfPalettes

int numberOfPalettes

isTransposed

boolean isTransposed

performJComboBoxEvent

boolean performJComboBoxEvent
JComboBox.setSelectedItem() or setSelectedIndex() always fires action event. If you call setSelectedItem() or setSelectedIndex() at itemStateChanged() or actionPerformed(), the setSelectedItem() or setSelectedIndex() will make loop calls of itemStateChanged() or actionPerformed(). This is not what we want. We want the setSelectedItem() or setSelectedIndex() behavior like java.awt.Choice. This flag is used to serve this purpose.

Class ncsa.hdf.view.DefaultImageView extends javax.swing.JInternalFrame implements Serializable

Serialized Fields

viewer

ViewManager viewer
The main HDFView.


dataset

ScalarDS dataset
The Scalar Dataset.


imageComponent

ncsa.hdf.view.DefaultImageView.ImageComponent imageComponent
The JComponent containing the image.


image

java.awt.Image image
The image contained in the ImageView.


zoomFactor

float zoomFactor
The zooming factor of this image.


indexedImageData

byte[] indexedImageData
The byte data array of an indexed image.


imagePalette

byte[][] imagePalette
The color table of the image.


frameTitle

java.lang.String frameTitle
The title of this imageview.


valueField

javax.swing.JTextField valueField
TextField to show the image value.


isTrueColor

boolean isTrueColor
Flag to indicate if the image is a true color image


is3D

boolean is3D
Flag to indicate if the image is a 3D


isPlaneInterlace

boolean isPlaneInterlace
Flag to indicate if the image is plane interleaved


isHorizontalFlipped

boolean isHorizontalFlipped

isVerticalFlipped

boolean isVerticalFlipped

rotateCount

int rotateCount

NT

char NT
the number type of the image data


data

java.lang.Object data
the raw data of the image


isUnsigned

boolean isUnsigned
flag to indicate if the original data type is unsigned integer


toolkit

java.awt.Toolkit toolkit

dataRange

double[] dataRange

paletteComponent

ncsa.hdf.view.DefaultImageView.PaletteComponent paletteComponent

palName

java.lang.String palName

animationSpeed

int animationSpeed

rotateRelatedItems

java.util.List rotateRelatedItems

imageScroller

javax.swing.JScrollPane imageScroller

isTransposed

boolean isTransposed

Class ncsa.hdf.view.DefaultMetaDataView extends javax.swing.JDialog implements Serializable

Serialized Fields

viewer

ViewManager viewer
The main HDFView.


hObject

HObject hObject
The HDF data object


tabbedPane

javax.swing.JTabbedPane tabbedPane

attrContentArea

javax.swing.JTextArea attrContentArea

attrTable

javax.swing.JTable attrTable

attrTableModel

javax.swing.table.DefaultTableModel attrTableModel

attrNumberLabel

javax.swing.JLabel attrNumberLabel

numAttributes

int numAttributes

isH5

boolean isH5

isH4

boolean isH4

userBlock

byte[] userBlock

userBlockArea

javax.swing.JTextArea userBlockArea

jamButton

javax.swing.JButton jamButton

Class ncsa.hdf.view.DefaultPaletteView extends javax.swing.JDialog implements Serializable

Serialized Fields

lineColors

java.awt.Color[] lineColors

lineLabels

java.lang.String[] lineLabels

checkRed

javax.swing.JRadioButton checkRed

checkGreen

javax.swing.JRadioButton checkGreen

checkBlue

javax.swing.JRadioButton checkBlue

chartP

ncsa.hdf.view.DefaultPaletteView.ChartPanel chartP
Panel that draws plot of data values.


x0

int x0

y0

int y0

originalImage

java.awt.Image originalImage

currentImage

java.awt.Image currentImage

isPaletteChanged

boolean isPaletteChanged

palette

byte[][] palette

dataset

ScalarDS dataset

imageView

ImageView imageView

paletteData

int[][] paletteData

choicePalette

javax.swing.JComboBox choicePalette

paletteValueTable

ncsa.hdf.view.DefaultPaletteView.PaletteValueTable paletteValueTable

Class ncsa.hdf.view.DefaultTableView extends javax.swing.JInternalFrame implements Serializable

Serialized Fields

viewer

ViewManager viewer
The main HDFView.


NT

char NT
numberical data type. B = bypte array, S = short array, I = inte array, J = long array, F = float array, and D = double array.


dataset

Dataset dataset
The Scalar Dataset.


dataValue

java.lang.Object dataValue
The value of the dataset.


table

javax.swing.JTable table
The table used to hold the table data.


cellLabel

javax.swing.JLabel cellLabel
Label to indicate the current cell location.


cellValueField

javax.swing.JTextArea cellValueField
Text field to display the value of of the current cell.


frameTitle

java.lang.String frameTitle
The title of this imageview.


isValueChanged

boolean isValueChanged

toolkit

java.awt.Toolkit toolkit

isReadOnly

boolean isReadOnly

isDisplayTypeChar

boolean isDisplayTypeChar

isTransposed

boolean isTransposed

checkScientificNotation

javax.swing.JCheckBoxMenuItem checkScientificNotation

Class ncsa.hdf.view.DefaultTextView extends javax.swing.JInternalFrame implements Serializable

Serialized Fields

viewer

ViewManager viewer
The main HDFView.


dataset

ScalarDS dataset
The Scalar Dataset.


textPane

javax.swing.JTextPane textPane
GUI component: the text area used to dispaly the text content.


text

java.lang.String[] text
The string text.


textAreas

javax.swing.JTextArea[] textAreas
text areas to hold the text.


table

javax.swing.JTable table
the table to hold the text content


isReadOnly

boolean isReadOnly

isTextChanged

boolean isTextChanged

Class ncsa.hdf.view.DefaultTreeView extends javax.swing.JPanel implements Serializable

Serialized Fields

viewer

ViewManager viewer
the owner of this treeview


root

javax.swing.tree.DefaultMutableTreeNode root
The super root of tree: all open files start at this root.


tree

javax.swing.JTree tree
The tree which holds file structures.


treeModel

javax.swing.tree.DefaultTreeModel treeModel
The tree model


fileList

java.util.List fileList
A list open files.


toolkit

java.awt.Toolkit toolkit

selectedFile

FileFormat selectedFile
Selected file


selectedNode

javax.swing.tree.DefaultMutableTreeNode selectedNode
The current selected node.


selectedObject

HObject selectedObject
the current selected object


isDefaultDisplay

boolean isDefaultDisplay
flag to indicate if the dataset is displayed as default


popupMenu

javax.swing.JPopupMenu popupMenu
The popup menu used to display user choice of actions on data object.


editGUIs

java.util.List editGUIs
a list of editing GUI components


objectsToCopy

java.util.List objectsToCopy
the list of current selected objects


addTableMenuItem

javax.swing.JMenuItem addTableMenuItem

addDatatypeMenuItem

javax.swing.JMenuItem addDatatypeMenuItem

addLinkMenuItem

javax.swing.JMenuItem addLinkMenuItem

Class ncsa.hdf.view.FileConversionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

fileTypeFrom

java.lang.String fileTypeFrom

fileTypeTo

java.lang.String fileTypeTo

srcFileField

javax.swing.JTextField srcFileField

dstFileField

javax.swing.JTextField dstFileField

isConverted

boolean isConverted

convertedFile

java.lang.String convertedFile

toFileExtension

java.lang.String toFileExtension

fileList

java.util.List fileList

currentDir

java.lang.String currentDir

toolkit

java.awt.Toolkit toolkit

Class ncsa.hdf.view.HDFView extends javax.swing.JFrame implements Serializable

Serialized Fields

rootDir

java.lang.String rootDir
the directory where the HDFView is installed


currentDir

java.lang.String currentDir
the current working directory


currentFile

java.lang.String currentFile
the current working file


props

ViewProperties props
the view properties


treeView

TreeView treeView
GUI component: the TreeView


frameOffset

int frameOffset
The offset when a new dataview is added into the main window.


contentPane

javax.swing.JDesktopPane contentPane
GUI component: the panel which is used to display the data content


statusArea

javax.swing.JTextArea statusArea
GUI component: the text area for showing status message


attributeArea

javax.swing.JTextArea attributeArea
GUI component: the text area for quick attribute view


infoTabbedPane

javax.swing.JTabbedPane infoTabbedPane

windowMenu

javax.swing.JMenu windowMenu
GUI component: a list of current data windwos


fileMenu

javax.swing.JMenu fileMenu
GUI component: file menu on the menubar


usersGuideWindow

javax.swing.JFrame usersGuideWindow
GUI component: window to show the Users' Guide


usersGuideEditorPane

javax.swing.JEditorPane usersGuideEditorPane
GUI component: editorPane to show the Users' Guide


message

java.lang.StringBuffer message
the string buffer holding the status message


metadata

java.lang.StringBuffer metadata
the string buffer holding the meadata information


toolkit

java.awt.Toolkit toolkit

editGUIs

java.util.List editGUIs
The list of GUI components related to editing


h5GUIs

java.util.List h5GUIs
The list of GUI components related to HDF5


h4GUIs

java.util.List h4GUIs
The list of GUI components related to HDF4


usersGuideURL

java.net.URL usersGuideURL
The URL of the User's Guide.


previousUsersGuideURL

java.net.URL previousUsersGuideURL
The previous URL of the User's Guide.


ugField

javax.swing.JTextField ugField
the text field to display the current ug link


visitedUsersGuideURLs

java.util.Stack visitedUsersGuideURLs
The previously visited URLs for back action.


usersGuideBackButton

javax.swing.JButton usersGuideBackButton
The back button for users guide.


urlBar

javax.swing.JComboBox urlBar
to add and display url


srbFileDialog

javax.swing.JDialog srbFileDialog
dialog to display srb files

Class ncsa.hdf.view.MathConversionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

aField

javax.swing.JTextField aField

bField

javax.swing.JTextField bField

infoArea

javax.swing.JTextArea infoArea

functionList

javax.swing.JList functionList

dataValue

java.lang.Object dataValue

NT

char NT

toolkit

java.awt.Toolkit toolkit

functionDescription

java.lang.String[] functionDescription

isConverted

boolean isConverted

Class ncsa.hdf.view.NewAttributeDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

hObject

HObject hObject
the object which the attribute to be attached to


newAttribute

Attribute newAttribute

nameField

javax.swing.JTextField nameField
TextField for entering the name of the dataset


typeChoice

javax.swing.JComboBox typeChoice
The Choice of the datatypes


valueField

javax.swing.JTextField valueField
TextField for entering the attribute value.


fileFormat

FileFormat fileFormat

lengthField

javax.swing.JTextField lengthField
TextField for entering the length of the data array or string.


arrayLengthLabel

javax.swing.JLabel arrayLengthLabel

isAttributeCreated

boolean isAttributeCreated
flag to indicate if the dataset is created


objListScroller

javax.swing.JScrollPane objListScroller

isH5

boolean isH5

helpDialog

javax.swing.JDialog helpDialog

h4SdAttrRadioButton

javax.swing.JRadioButton h4SdAttrRadioButton

h4GrAttrRadioButton

javax.swing.JRadioButton h4GrAttrRadioButton

Class ncsa.hdf.view.NewDatasetDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

currentSizeField

javax.swing.JTextField currentSizeField

maxSizeField

javax.swing.JTextField maxSizeField

chunkSizeField

javax.swing.JTextField chunkSizeField

stringLengthField

javax.swing.JTextField stringLengthField

parentChoice

javax.swing.JComboBox parentChoice

classChoice

javax.swing.JComboBox classChoice

sizeChoice

javax.swing.JComboBox sizeChoice

endianChoice

javax.swing.JComboBox endianChoice

rankChoice

javax.swing.JComboBox rankChoice

compressionLevel

javax.swing.JComboBox compressionLevel

checkUnsigned

javax.swing.JCheckBox checkUnsigned

checkCompression

javax.swing.JCheckBox checkCompression

checkContinguous

javax.swing.JRadioButton checkContinguous

checkChunked

javax.swing.JRadioButton checkChunked

helpDialog

javax.swing.JDialog helpDialog

isH5

boolean isH5

groupList

java.util.List groupList
a list of current groups


newObject

HObject newObject

fileFormat

FileFormat fileFormat

toolkit

java.awt.Toolkit toolkit

dataView

DataView dataView

Class ncsa.hdf.view.NewDatatypeDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

stringLengthField

javax.swing.JTextField stringLengthField

parentChoice

javax.swing.JComboBox parentChoice

classChoice

javax.swing.JComboBox classChoice

sizeChoice

javax.swing.JComboBox sizeChoice

endianChoice

javax.swing.JComboBox endianChoice

checkUnsigned

javax.swing.JCheckBox checkUnsigned

isH5

boolean isH5

groupList

java.util.List groupList
a list of current groups


newObject

HObject newObject

fileFormat

FileFormat fileFormat

toolkit

java.awt.Toolkit toolkit

Class ncsa.hdf.view.NewFileDialog extends javax.swing.JFileChooser implements Serializable

Serialized Fields

fileType

java.lang.String fileType
flag if the new file is an HDF5


currentDir

java.lang.String currentDir
The current working directory


viewDir

java.lang.String viewDir
The view working directory


fileCreated

boolean fileCreated

fileList

java.util.List fileList

toolkit

java.awt.Toolkit toolkit

viewer

javax.swing.JFrame viewer

isH5

boolean isH5

isH4

boolean isH4

Class ncsa.hdf.view.NewGroupDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

parentChoice

javax.swing.JComboBox parentChoice

groupList

java.util.List groupList
a list of current groups


newObject

HObject newObject

fileFormat

FileFormat fileFormat

toolkit

java.awt.Toolkit toolkit

Class ncsa.hdf.view.NewImageDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

widthField

javax.swing.JTextField widthField

heightField

javax.swing.JTextField heightField

parentChoice

javax.swing.JComboBox parentChoice

checkIndex

javax.swing.JRadioButton checkIndex

checkTrueColor

javax.swing.JRadioButton checkTrueColor

checkInterlacePixel

javax.swing.JRadioButton checkInterlacePixel

checkInterlacePlane

javax.swing.JRadioButton checkInterlacePlane

groupList

java.util.List groupList
a list of current groups


isH5

boolean isH5

newObject

HObject newObject

fileFormat

FileFormat fileFormat

toolkit

java.awt.Toolkit toolkit

Class ncsa.hdf.view.NewLinkDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

parentChoice

javax.swing.JComboBox parentChoice

linkToChoice

javax.swing.JComboBox linkToChoice

checkUnsigned

javax.swing.JCheckBox checkUnsigned

groupList

java.util.List groupList
a list of current groups


objList

java.util.List objList
a list of current objects


newObject

HObject newObject

fileFormat

FileFormat fileFormat

toolkit

java.awt.Toolkit toolkit

Class ncsa.hdf.view.NewTableDataDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

fileformat

FileFormat fileformat

nameField

javax.swing.JTextField nameField

dimsField

javax.swing.JTextField dimsField

parentChoice

javax.swing.JComboBox parentChoice

nFieldBox

javax.swing.JComboBox nFieldBox

isH5

boolean isH5

groupList

java.util.List groupList
a list of current groups


newObject

HObject newObject

toolkit

java.awt.Toolkit toolkit

dataView

DataView dataView

numberOfMembers

int numberOfMembers

table

javax.swing.JTable table

tableModel

javax.swing.table.DefaultTableModel tableModel

rowEditorModel

ncsa.hdf.view.NewTableDataDialog.RowEditorModel rowEditorModel

cellEditor

javax.swing.DefaultCellEditor cellEditor

Class ncsa.hdf.view.UserOptionsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

viewer

javax.swing.JFrame viewer
The main HDFView.


H4toH5Path

java.lang.String H4toH5Path

H4toH5Field

javax.swing.JTextField H4toH5Field

UGField

javax.swing.JTextField UGField

workField

javax.swing.JTextField workField

fileExtField

javax.swing.JTextField fileExtField

maxMemberField

javax.swing.JTextField maxMemberField

startMemberField

javax.swing.JTextField startMemberField

fontSizeChoice

javax.swing.JComboBox fontSizeChoice

fontTypeChoice

javax.swing.JComboBox fontTypeChoice

delimiterChoice

javax.swing.JComboBox delimiterChoice

choiceTreeView

javax.swing.JComboBox choiceTreeView

choiceMetaDataView

javax.swing.JComboBox choiceMetaDataView

choiceTextView

javax.swing.JComboBox choiceTextView

choiceTableView

javax.swing.JComboBox choiceTableView

choiceImageView

javax.swing.JComboBox choiceImageView

choicePaletteView

javax.swing.JComboBox choicePaletteView

rootDir

java.lang.String rootDir

workDir

java.lang.String workDir

checkCurrentUserDir

javax.swing.JCheckBox checkCurrentUserDir

currentDirButton

javax.swing.JButton currentDirButton

fontSize

int fontSize

isFontChanged

boolean isFontChanged

isUserGuideChanged

boolean isUserGuideChanged

isWorkDirChanged

boolean isWorkDirChanged

srbJList

javax.swing.JList srbJList

srbFields

javax.swing.JTextField[] srbFields

srbVector

java.util.Vector srbVector

Class ncsa.hdf.view.ViewProperties extends java.util.Properties implements Serializable


Package ncsa.hdf.object

Class ncsa.hdf.object.Attribute extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name
The name of the attribute.


type

Datatype type
The datatype of the attribute.


rank

int rank
The rank of the data value of this attribute. An attribute can have multi dimensions.


dims

long[] dims
The dimension sizes of the data value of this attribute.


value

java.lang.Object value
The data value of this attribute.


isUnsigned

boolean isUnsigned
flag to indicate if the data type is an unsigned integer.

Class ncsa.hdf.object.CompoundDS extends Dataset implements Serializable

Serialized Fields

numberOfMembers

int numberOfMembers
The number of members of this compound dataset.


memberNames

java.lang.String[] memberNames
The names of members of this compound dataset.


memberTypes

int[] memberTypes
The data types of the members of this compound dataset.


memberOrders

int[] memberOrders
The number of data points of each member of this compound dataset. A member can be an array of atomic or compound data. The member order is the total size of the array. For scalar data, the member order is one.


memberDims

java.lang.Object[] memberDims
The dimension sizes of each memeber.


isMemberSelected

boolean[] isMemberSelected
The array to store flags to indicate if a member is selected. If a member is selected, the read/wirte will perform on the member. Applications such as HDFView will only display the selected members of the compound dataset.
 For example, if a compound dataset has four members
     String[] memberNames = {"X", "Y", "Z", "TIME"};
 and
     boolean[] isMemberSelected = {true, false, false, true};
 only members "X" and "TIME" are selected for read and write.
 

Class ncsa.hdf.object.Dataset extends HObject implements Serializable

Serialized Fields

data

java.lang.Object data
The buff which holds the content of this dataset. The type of the data object will be defined by implementing classes.


rank

int rank
The rank of this dataset.


dims

long[] dims
The current dimension sizes of this dataset


selectedDims

long[] selectedDims
The number of data points of each dimension of the selected subset. The select size must be less than or equal to the current dimension size. With both the starting position and selected sizes, the subset of a rectangle selection is fully defined.

For example, a 4 X 5 data set

     0,  1,  2,  3,  4
    10, 11, 12, 13, 14
    20, 21, 22, 23, 24
    30, 31, 32, 33, 34
 long[] dims = {4, 5};
 long[] startDims = {1, 2};
 long[] selectedDims = {3, 3};

 then the following subset is selected by the startDims and selectedDims
     12, 13, 14
     22, 23, 24
     32, 33, 34


startDims

long[] startDims
The starting position of each dimension of the selected subset. With both the starting position and selected sizes, the subset of a rectangle selection is fully defined.


selectedIndex

int[] selectedIndex
Indices of selected dimensions. selectedIndex[] is provied for two purpose:
  1. selectedIndex[] is used to indicate the order of dimensions for display. selectedIndex[0] = row, selectedIndex[1] = column and selectedIndex[2] = depth. For example, for a four dimesion dataset, if selectedIndex[] = {1, 2, 3}, then dim[1] is selected as row index, dim[2] is selected as column index and dim[3] is selected as depth index.
  2. selectedIndex[] is also used to select dimensions for display for datasets with three or more dimensions. We assume that application such as HDFView can only display data up to three dimension (2D spreadsheet/image with a third dimension which the 2D spreadsheet/image is cut from). For dataset with more than three dimensions, we need selectedIndex[] to store which three dimensions are chosen to display. For example,


selectedStride

long[] selectedStride
The number of elements to move from the start location in each dimension. For example, if selectedStride[0] = 2, every other data point is selected along dim[0].


chunkSize

long[] chunkSize
The chunk size of each dimension


compression

java.lang.String compression
Compression level.


datatype

Datatype datatype
the datatype of this dataset.


dimNames

java.lang.String[] dimNames
names of dimensions

Class ncsa.hdf.object.Datatype extends HObject implements Serializable

Serialized Fields

datatypeClass

int datatypeClass
The class of the datatype.


datatypeSize

int datatypeSize
The size (in bytes) of the datatype.


datatypeOrder

int datatypeOrder
The byte order of the datatype.


datatypeSign

int datatypeSign
The sign of the datatype.


nativeID

int nativeID
Datatype identifier of the implementing class of this datatype.

Class ncsa.hdf.object.FileFormat extends java.io.File implements Serializable

Serialized Fields

max_members

int max_members
Current Java application such as HDFView cannot handle files with large number of objects such 1,000,000 objects. max_members defines the maximum number of objects will be loaded into memory.


start_members

int start_members
Current Java application such as HDFView cannot handle files with large number of objects such 1,000,000 objects. start_members defines the starting index of objects will be loaded into memory.


fid

int fid
file identifier for the open file.

Class ncsa.hdf.object.Group extends HObject implements Serializable

Serialized Fields

parent

Group parent
The parent of this group.


memberList

java.util.List memberList
The list of members (in memory) of this group.


nMembersInFile

int nMembersInFile
Total number of members of this group in file.

Class ncsa.hdf.object.HObject extends java.lang.Object implements Serializable

Serialized Fields

filename

java.lang.String filename
The full path of the file that contains this object.


fid

int fid
The file identifier of this object.


fileFormat

FileFormat fileFormat
The file which contains this object


name

java.lang.String name
The name of the data object. The root group has its default name, a slash. The name can be changed except the root group.


path

java.lang.String path
The full path of the HDF4 or HDF5 data object. The full path always starts with the root, a slash. The path cannot be changed. Also, a path must ended with a slash.


oid

long[] oid
array of long integer storing unique identifier for each HDF object.

HDF4 objects are uniquely identified by the (tag_id, ref_id) pairs. HDF5 objects uniquely identified by the reference identifier.


hasAttribute

boolean hasAttribute

Class ncsa.hdf.object.ScalarDS extends Dataset implements Serializable

Serialized Fields

nativeDatatype

int nativeDatatype
The data type of this scalar dataset such as 32-bit integer, 32-bit float, etc.


interlace

int interlace
The interlace mode of the stored raster image data


imageDataRange

double[] imageDataRange

palette

byte[][] palette
The indexed RGB color model with 256 colors.

The palette values are stored in a two-dimensional byte array and arrange by color components of red, green and blue. palette[][] = byte[3][256], where, palette[0][], palette[1][] and palette[2][] are the red, green and blue components respectively.


isImage

boolean isImage
True if this dataset is an image.


isTrueColor

boolean isTrueColor
True if this dataset is a true color image.


isText

boolean isText
True if this dataset is ASCII text.


isUnsigned

boolean isUnsigned
Flag to indicate if the original C data is unsigned integer.


unsignedConverted

boolean unsignedConverted
Flag to indicate is the original unsigned C data is converted.


Package ncsa.hdf.object.h4

Class ncsa.hdf.object.h4.H4Datatype extends Datatype implements Serializable

Class ncsa.hdf.object.h4.H4File extends FileFormat implements Serializable

Serialized Fields

flag

int flag
the file access flag.


fullFileName

java.lang.String fullFileName
The full name of this file, path+name


rootNode

javax.swing.tree.DefaultMutableTreeNode rootNode
The root node of the tree structure of this file.


objList

java.util.List objList
The list of unique (tag, ref) pairs. It is used to avoid duplicate objects in memory.


grid

int grid
The GR interface identifier. The identifier is returned by GRstart(fid), which initializes the GR interface for the file specified by the parameter. GRstart(fid) is an expensive call. It should be called only once. Calling GRstart(fid) in a loop should be avoided.


isReadOnly

boolean isReadOnly

isNetCDF

boolean isNetCDF

sdid

int sdid
The SDS interface identifier. The identifier is returned by SDstart(fname, flag), which initializes the SD interface for the file specified by the parameter. SDstart(fname, flag) is an expensive call. It should be called only once. Calling SDstart(fname, flag) in a loop should be avoided.


showAll

boolean showAll

Class ncsa.hdf.object.h4.H4GRImage extends ScalarDS implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


grid

int grid
The GR interface identifier obtained from GRstart(fid)


ncomp

int ncomp
The number of components in the raster image

Class ncsa.hdf.object.h4.H4Group extends Group implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


grid

int grid
The GR interface identifier obtained from GRstart(file_id)


sdid

int sdid
The SDS interface identifier obtained from SDstart(filename, access)

Class ncsa.hdf.object.h4.H4SDS extends ScalarDS implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


sdid

int sdid
The SDS interface identifier obtained from SDstart(filename, access)

Class ncsa.hdf.object.h4.H4Vdata extends CompoundDS implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


numberOfRecords

int numberOfRecords
Number of records of this Vdata table.


Package ncsa.hdf.object.h5

Class ncsa.hdf.object.h5.H5CompoundDS extends CompoundDS implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


flatNameList

java.util.List flatNameList
A list of names of all fields including nested fields. The nested names are separated by ".". For example, if compound dataset "A" has the following nested structure,
 A --> m01
 A --> m02
 A --> nest1 --> m11
 A --> nest1 --> m12
 A --> nest1 --> nest2 --> m21
 A --> nest1 --> nest2 --> m22
 i.e.
 A = { m01, m02, nest1{m11, m12, nest2{ m21, m22}}}
 
The flatNameList of compound dataset "A" will be {m01, m02, nest1.m11, nest1.m12, nest1.nest2.m21, nest1.nest2.m22}


flatTypeList

java.util.List flatTypeList
A list of datatypes of all fields including nested fields.

See Also:
#flatNameList

isIndexTable

boolean isIndexTable

Class ncsa.hdf.object.h5.H5Datatype extends Datatype implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.

Class ncsa.hdf.object.h5.H5File extends FileFormat implements Serializable

Serialized Fields

flag

int flag
the file access flag.


fullFileName

java.lang.String fullFileName
The full name of this file; full path plus name


rootNode

javax.swing.tree.DefaultMutableTreeNode rootNode
The root node of the file hierearchy.


isReadOnly

boolean isReadOnly
flag to indicate if the file is readonly.

Class ncsa.hdf.object.h5.H5Group extends Group implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.

Class ncsa.hdf.object.h5.H5ScalarDS extends ScalarDS implements Serializable

Serialized Fields

attributeList

java.util.List attributeList
The list of attributes of this data object. Members of the list are instance of Attribute.


paletteRefs

byte[] paletteRefs
byte array containing references of palettes. Each reference requires eight bytes storage. Therefore, the array length is 8*numberOfPalettes.


isVLEN

boolean isVLEN


Package ncsa.hdf.hdflib

Class ncsa.hdf.hdflib.HDFException extends java.lang.Exception implements Serializable

Serialized Fields

HDFerror

int HDFerror

msg

java.lang.String msg

Class ncsa.hdf.hdflib.HDFJavaException extends HDFException implements Serializable

Serialized Fields

msg

java.lang.String msg

Class ncsa.hdf.hdflib.HDFLibraryException extends HDFException implements Serializable

Serialized Fields

HDFerror

int HDFerror

msg

java.lang.String msg

Class ncsa.hdf.hdflib.HDFNotImplementedException extends HDFJavaException implements Serializable

Serialized Fields

msg

java.lang.String msg


Package ncsa.hdf.hdf5lib.exceptions

Class ncsa.hdf.hdf5lib.exceptions.HDF5AtomException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5AttributeException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5BtreeException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5DataFiltersException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5DatasetInterfaceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5DataStorageException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5Exception extends java.lang.Exception implements Serializable

Serialized Fields

detailMessage

java.lang.String detailMessage

Class ncsa.hdf.hdf5lib.exceptions.HDF5ExternalFileListException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5FileInterfaceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5FunctionArgumentException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5FunctionEntryExitException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5HeapException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5InternalErrorException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5JavaException extends HDF5Exception implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException extends HDF5Exception implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5LowLevelIOException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5MetaDataCacheException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5ObjectHeaderException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5ReferenceException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5ResourceUnavailableException extends HDF5LibraryException implements Serializable

Class ncsa.hdf.hdf5lib.exceptions.HDF5SymbolTableException extends HDF5LibraryException implements Serializable