H5DataSet.h

// C++ informative line for the emacs editor: -*- C++ -*-
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef __H5DataSet_H
#define __H5DataSet_H

namespace H5 {

//  Inheritance: multiple H5Object/AbstractDs -> H5Location -> IdComponent
class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
   public:

        // Close this dataset.
        virtual void close();

        // Extends the dataset with unlimited dimension.
        void extend(const hsize_t* size) const;

        // Fills a selection in memory with a value
        void fillMemBuf(const void *fill, const DataType& fill_type, void *buf, const DataType& buf_type, const DataSpace& space) const;
        //void fillMemBuf(const void *fill, DataType& fill_type, void *buf, DataType& buf_type, DataSpace& space); // removed from 1.8.18 and 1.10.1

        // Fills a selection in memory with zero
        void fillMemBuf(void *buf, const DataType& buf_type, const DataSpace& space) const;
        //void fillMemBuf(void *buf, DataType& buf_type, DataSpace& space); // removed from 1.8.18 and 1.10.1

        // Gets the creation property list of this dataset.
        DSetCreatPropList getCreatePlist() const;

        // Returns the address of this dataset in the file.
        haddr_t getOffset() const;

        // Gets the dataspace of this dataset.
        virtual DataSpace getSpace() const;

        // Determines whether space has been allocated for a dataset.
        void getSpaceStatus(H5D_space_status_t& status) const;

        // Returns the amount of storage size required for this dataset.
        virtual hsize_t getStorageSize() const;

        // Returns the in memory size of this attribute's data.
        virtual size_t getInMemDataSize() const;

        // Returns the number of bytes required to store VL data.
        hsize_t getVlenBufSize(const DataType& type, const DataSpace& space) const;
        //hsize_t getVlenBufSize(DataType& type, DataSpace& space) const; // removed from 1.8.18 and 1.10.1

        // Reclaims VL datatype memory buffers.
        static void vlenReclaim(const DataType& type, const DataSpace& space, const DSetMemXferPropList& xfer_plist, void* buf);
        static void vlenReclaim(void *buf, const DataType& type, const DataSpace& space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT);

        // Reads the data of this dataset and stores it in the provided buffer.
        // The memory and file dataspaces and the transferring property list
        // can be defaults.
        void read(void* buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT) const;
        void read(H5std_string& buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT) const;

        // Writes the buffered data to this dataset.
        // The memory and file dataspaces and the transferring property list
        // can be defaults.
        void write(const void* buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT) const;
        void write(const H5std_string& buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT) const;

        // Iterates the selected elements in the specified dataspace - not implemented in C++ style yet
        int iterateElems(void* buf, const DataType& type, const DataSpace& space, H5D_operator_t op, void* op_data = NULL);

        virtual H5std_string fromClass () const { return("DataSet"); }

        // Creates a dataset by way of dereference.
        DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT);
        DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT);

        // Default constructor.
        DataSet();

        // Copy constructor.
        DataSet(const DataSet& original);

        // Creates a copy of an existing DataSet using its id.
        DataSet(const hid_t existing_id);

        // Gets the dataset id.
        virtual hid_t getId() const;

        // Destructor: properly terminates access to this dataset.
        virtual ~DataSet();

   protected:
#ifndef DOXYGEN_SHOULD_SKIP_THIS
        // Sets the dataset id.
        virtual void p_setId(const hid_t new_id);
#endif // DOXYGEN_SHOULD_SKIP_THIS

   private:
        hid_t id;       // HDF5 dataset id

        // This function contains the common code that is used by
        // getTypeClass and various API functions getXxxType
        // defined in AbstractDs for generic datatype and specific
        // sub-types
        virtual hid_t p_get_type() const;

        // Reads variable or fixed len strings from this dataset.
        void p_read_fixed_len(const hid_t mem_type_id, const hid_t mem_space_id, const hid_t file_space_id, const hid_t xfer_plist_id, H5std_string& strg) const;
        void p_read_variable_len(const hid_t mem_type_id, const hid_t mem_space_id, const hid_t file_space_id, const hid_t xfer_plist_id, H5std_string& strg) const;

        // Friend function to set DataSet id.  For library use only.
        friend void f_DataSet_setId(DataSet* dset, hid_t new_id);

}; // end of DataSet
} // namespace H5

#endif // __H5DataSet_H