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Software Changes from Release to Release in HDF5 1.10
For a description of the major new features that were introduced, please see New Features in HDF5 Release 1.10.)
This page provides information on the changes that a maintenance developer needs to be aware of between successive releases of HDF5, such as:
- New or changed features or tools
- Syntax and behavioral changes in the existing application programming interface (API)
- Certain types of changes in configuration or build processes
Note that bug fixes and performance enhancements in the C library are automatically picked up by the C++, Fortran, and Java libraries.
The following information is included below.
- Compatibility and Performance Issues
- Release 1.10.9 versus 1.10.8]
- Release 1.10.8 versus 1.10.7
- Release 1.10.7 versus 1.10.6
- Release 1.10.6 versus 1.10.5
- Release 1.10.5 versus 1.10.4, 1.10.3, and 1.10.2
- Release 1.10.4 versus Release 1.10.3
- Release 1.10.3 versus Release 1.10.2
- Release 1.10.2 versus Release 1.10.1
- Release 1.10.1 versus Release 1.10.0 (and 1.10.0-patch1)
- Release 1.10.0 of March 2016 versus Release 1.8.16
See API Compatibility Reports for 1.10 for information regarding compatibility with previous releases.
Compatibility and Performance Issues
Not all HDF5-1.10 releases are compatible. Users should NOT be using 1.10 releases prior to HDF5-1.10.3. See the compatibility matrix below for details on compatibility between 1.10 releases:
| Release | 1.10.5+ | 1.10.4 | 1.10.3 | 1.10.2 | 1.10.1 | 1.10.0-patch1 | 1.10.0 |
|---|---|---|---|---|---|---|---|
| 1.10.5+ | Yes | Yes | No | No | No | No | |
| 1.10.4 | Yes | Yes | No | No | No | No | |
| 1.10.3 | Yes | Yes | No | No | No | No | |
| 1.10.2 | No | No | No | No | No | No |
The following images show how performance has changed from release to release.
The release notes also list changes made to the library, but these notes tend to be more at a more detail-oriented level. The release notes may include new features, bugs fixed, supported configuration features, platforms on which the library has been tested, and known problems. The release note files are listed below and can be found at the top level of the HDF5 source code tree in the release_docs directory.
| Release Notes | Technical notes regarding the current release of the HDF5 library (RELEASE.txt in the source code) |
| HISTORY-1_10.txt | Release information for all HDF5-1.10 releases |
| HISTORY-1_8_0-1_10_0.txt | Development history between the HDF5-1.8.0 and HDF5-1.10.0 releases |
| HISTORY-1_8.txt | Release information for HDF5-1.8.0 through HDF5-1.8.21 releases |
| HISTORY-1_0-1_8_0_rc3.txt | Technical notes starting with HDF5-1.0.0 and ending with HDF5-1.8.0-rc3 (the state of the code prior to the HDF5-1.8.0 release) |
Release 1.10.9 versus 1.10.8
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros
In the Java API
One Java wrapper was added:
H5.H5export_dataset
Compatibility Notes and Reports
See the API compatibility report between 1.10.8 and 1.10.9 for information regarding compatibility with the previous release.
Release 1.10.8 versus 1.10.7
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros
In the C++ API
One C++ wrapper was added: DataSet::operator=
Compatibility Notes and Reports
See the API compatibility report between 1.10.7 and 1.10.8 for information regarding compatibility with the previous release.
Release 1.10.7 versus 1.10.6
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros
In the C Interface (main library)
The following are new C functions in this release:
| Function | Description |
|---|---|
| H5Pget_fapl_splitter | Retrieves information for a splitter file access property list |
| H5Pget_fapl_splitter | Retrieves information for a splitter file access property list |
| H5Pset_fapl_splitter | Sets the file access property list to use the splitter driver |
| H5Pget_file_locking | Gets the file locking property values |
| H5Pset_file_locking | Sets the file locking property values |
| H5get_free_list_sizes | Gets the current size of the free lists used to manage memory |
| H5Scombine_hyperslab | Performs an operation on a hyperslab and an existing selection and returns the resulting selection |
| H5Scombine_select | Combines two hyperslab selections with an operation, returning a dataspace with the resulting selection |
| H5Smodify_select | Refines a hyperslab selection with an operation using a second hyperslab to modify it |
| H5Sselect_adjust | Adjusts a selection by subtracting an offset |
| H5Sselect_copy | Copies a selection from one dataspace to another |
| H5Sselect_intersect_block | Checks if current selection intersects with a block |
| H5Sselect_project_intersection | Projects the intersection of two source selections to a destination selection |
| H5Sselect_shape_same | Checks if two selections are the same shape |
In the C++ API
The following C++ wrappers were added:
FileAccPropList::getFileLocking See H5P_GET_FILE_LOCKING for details FileAccPropList::setFileLocking See H5P_SET_FILE_LOCKING for details
Compatibility Notes and Reports
See the API compatibility report between 1.10.7 and 1.10.8 for information regarding compatibility with the previous release.
Release 1.10.6 versus 1.10.5
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros
In the C Interface (main library)
The following are new C functions in this release:
| Function | Description |
|---|---|
| H5Pget_fapl_hdfs | Gets the information of the given Read-Only HDFS virtual file driver |
| H5Pget_fapl_ros3 | Gets the information of the given Read-Only S3 virtual file driver |
| H5Pset_fapl_hdfs | Sets up Read-Only HDFS virtual file driver |
| H5Pset_fapl_ros3 | Sets up Read-Only S3 virtual file driver |
In the C++ API
The following C++ wrappers were added:
| Function | Description |
|---|---|
| LinkCreatPropList::getCreateIntermediateGroup() const | See H5Pget_create_intermediate_group |
| LinkCreatPropList::setCreateIntermediateGroup(bool crt_intmd_group) const | See H5Pset_create_intermediate_group |
Compatibility Notes and Reports
See the API compatibility report between 1.10.7 and 1.10.8 for information regarding compatibility with the previous release.
Release 1.10.5 versus 1.10.4
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros
In the C Interface (main library)
The following are new C functions in this release:
| Function | Description |
|---|---|
| H5Dget_chunk_info | Retrieves information about a chunk specified by the chunk index |
| H5Dget_chunk_info_by_coord | Retrieves information about a chunk specified by its coordinates |
| H5Dget_num_chunks | Retrieves number of chunks that have nonempty intersection with a specified selection |
| H5Fget_dset_no_attrs_hint | Retrieves the setting for determining whether the specified file does or does not create minimized dataset object headers |
| H5Fset_dset_no_attrs_hint | Sets the flag to create minimized dataset object headers |
| H5Pget_dset_no_attrs_hint | Retrieves the setting for determining whether the specified DCPL does or does not create minimized dataset object headers |
| H5Pset_dset_no_attrs_hint | Sets the flag to create minimized dataset object headers |
The following changed in this release:
| Function | Description |
|---|---|
| H5Oget_info H5Oget_info_by_name H5Oget_info_by_idx H5Ovisit H5Ovisit_by_name |
In 1.10.3 the original functions were versioned to H5Oget_info1 and H5Ovisit1 and the macros H5Oget_info* and H5Ovisit* were created. This broke the API compatibility for a maintenance release. In HDF5-1.10.5, the macros introduced in HDF5-1.10.3 were removed. The H5Oget_info1 and H5Ovisit1 APIs were copied to H5Oget_Info* and H5Ovisit*. As an example, H5Oget_info and H5Oget_info1 are identical in this release. |
In the C++ API
The following C++ wrapper was added:
| Function | Description |
|---|---|
| H5Object::visit() | Wrapper for the C API H5O_VISIT2. Recursively visit elements reachable from an HDF5 object and perform a common set of operations across all of those elements. See H5O_VISIT2 for more information on this function. |
In the Fortran API
The following Fortran wrappers were added or changed:
| Function | Description |
|---|---|
| h5fget_dset_no_attrs_hint_f h5fset_dset_no_attrs_hint_f h5pget_dset_no_attrs_hint_f h5pset_dset_no_attrs_hint_f |
Wrappers for the dataset object header minimization calls. See H5Fget_dset_no_attrs_hint, H5Fset_dset_no_attrs_hint, H5Pget_dset_no_attrs_hint, and H5Pset_dset_no_attrs_hint. |
| h5ovisit_f h5oget_info_by_name_f h5oget_info_f h5oget_info_by_idx_f h5ovisit_by_name_f |
Added new Fortran ‘fields’ optional parameter. See H5Ovisit2, H5Oget_info_by_name2, H5Oget_info2, H5Oget_info_by_idx2, and H5Ovisit_by_name2. |
The following Fortran utility function was added:
h5gmtime converts (C) ‘time_t’ structure to Fortran DATE AND TIME storage format
A new Fortran derived type was added:
c_h5o_info_t This is interoperable with C’s h5o_info_t. This is needed for callback functions which pass C’s h5o_info_t data type definition.
See the Fortran signature for H5O_GET_INFO2.
In the Java wrapper
The following Java wrappers were added or changed:
H5Fset_libver_bounds See the C API H5F_SET_LIBVER_BOUNDS for information on this function H5Fget_dset_no_attrs_hint
H5Fset_dset_no_attrs_hint
H5Pget_dset_no_attrs_hint
H5Pset_dset_no_attrs_hint
Wrappers for the dataset object header minimization calls See H5Fget_dset_no_attrs_hint, H5Fset_dset_no_attrs_hint, H5Pget_dset_no_attrs_hint, and H5P_SET_DSET_NO_ATTRS_HINT for more information on these APIs.
Compatibility Notes and Reports
See the API compatibility report between 1.10.5 and 1.10.2/1.10.3/1.10.4 for details.
Release 1.10.4 versus 1.10.3
See the API compatibility report between 1.10.4 and 1.10.3 for details.
Release 1.10.3 versus 1.10.2
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros In the C Interface (main library)
The following are new C functions in this release:
H5D_READ_CHUNK Moved from HDF5 High Level Optimizations library to core library H5D_WRITE_CHUNK Moved from HDF5 High Level Optimizations library to core library H5O_GET_INFO
H5O_GET_INFO1
H5O_GET_INFO2
The function H5O_GET_INFO was moved to H5Oget_info1, and the macro H5O_GET_INFO was created that can be mapped to either H5O_GET_INFO1 or H5O_GET_INFO2. For HDF5-1.10 and earlier releases, H5O_GET_INFO is mapped to H5O_GET_INFO1 by default. H5O_GET_INFO_BY_IDX
H5O_GET_INFO_BY_IDX1
H5O_GET_INFO_BY_IDX2
The function H5O_GET_INFO_BY_IDX was moved to H5Oget_info_by_idx1, and the macro H5O_GET_INFO_BY_IDX was created that can be mapped to either H5O_GET_INFO_BY_IDX1 or H5O_GET_INFO_BY_IDX2. For HDF5-1.10 and earlier releases, H5O_GET_INFO_BY_IDX is mapped to H5O_GET_INFO_BY_IDX1 by default. H5O_GET_INFO_BY_NAME
H5O_GET_INFO_BY_NAME1
H5O_GET_INFO_BY_NAME2
The function H5O_GET_INFO_BY_NAME was moved to H5Oget_info_by_name1, and the macro H5O_GET_INFO_BY_NAME was created that can be mapped to either H5O_GET_INFO_BY_NAME1 or H5O_GET_INFO_BY_NAME2. For HDF5-1.10 and earlier releases, H5O_GET_INFO_BY_NAME is mapped to H5O_GET_INFO_BY_NAME1 by default. H5O_VISIT
H5O_VISIT1
H5O_VISIT2
The function H5O_VISIT was moved to H5Ovisit1, and the macro H5O_VISIT was created that can be mapped to either H5O_VISIT1 or H5O_VISIT2. For HDF5-1.10 and earlier releases, H5O_VISIT is mapped to H5O_VISIT1 by default. H5O_VISIT_BY_NAME
H5O_VISIT_BY_NAME1
H5O_VISIT_BY_NAME2
The function H5Ovisit_by_name was moved to H5Ovisit_by_name1, and the macro H5O_VISIT_BY_NAME was created that can be mapped to either H5O_VISIT_BY_NAME1 or H5O_VISIT_BY_NAME2. For HDF5-1.10 and earlier releases, H5O_VISIT_BY_NAME is mapped to H5O_VISIT_BY_NAME1 by default.
In the C High Level Interface
The following C functions were deprecated in this release:
H5DO_READ_CHUNK Deprecated, moved to H5D_READ_CHUNK H5DO_WRITE_CHUNK Deprecated, moved to H5D_WRITE_CHUNK
In the C++ API
Several C++ wrappers were added or modified to provide additional support. See the API Compatibility Report for details.
Compatibility Notes and Report
See the API compatibility report between 1.10.4 and 1.10.3 for details.
Release 1.10.2 versus 1.10.1
This section lists interface-level changes and other user-visible changes in behavior in the transition from HDF5 Release 1.10.1 to Release 1.10.2.
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros In the C Interface (main library)
The following are new C functions in this release:
H5D_GET_CHUNK_STORAGE_SIZE Returns storage amount allocated within a file for a raw data chunk in a dataset H5F_GET_EOA Retrieves the file’s EOA H5F_INCREMENT_FILESIZE Sets the file’s EOA to the maximum of (EOA, EOF) + increment
H5F_SET_LIBVER_BOUNDS Enables the switch of version bounds setting for a file H5FDdriver_query Queries a VFL driver for its feature flags when a file is not available (not documented in Reference Manual) H5P_GET_VIRTUAL_PREFIX Retrieves prefix applied to VDS source file paths H5P_SET_VIRTUAL_PREFIX Sets prefix to be applied to VDS source file paths
The following C functions changed in this release:
H5P_SET_LIBVER_BOUNDS HDF5-1.10 was added to the range of versions H5P_SET_VIRTUAL A change was made to the method of searching for VDS source files H5PL* The parameters for many of the H5PL APIs were renamed
In the C High Level Interface
The following new C function was added to this release:
H5DO_READ_CHUNK Reads a raw data chunk directly from a dataset in a file
In the C++ API
The following C++ wrappers were added:
H5Lcreate_soft Creates a soft link from link_name to target_name
H5Lcreate_hard Creates a hard link from new_name to curr_name
H5Lcopy Copy an object from a group of file
H5Lmove Rename an object in a group or file
H5Ldelete Removes the specified link from this location
H5Tencode Creates a binary object description of this datatype
H5Tdecode Returns the decoded type from the binary object description
H5Lget_info Returns the information of the named link
These were also added:
Class LinkCreatPropList for link create property list
Overloaded functions H5Location::createGroup to take a link creation property list
See the API Compatibility report for complete details.
In the Java API
The following Java wrappers were added:
H5Pset_evict_on_close Controls the library’s behavior of evicting metadata associated with a closed object H5Pget_evict_on_close Retrieves the file access property list setting that determines whether an HDF5 object will be evicted from the library’s metadata cache when closed H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list H5Pget_chunk_opts Retrieves the edge chunk option setting from a dataset creation property list
H5Pset_efile_prefix Sets the external dataset storage file prefix in the dataset access property list
H5Pget_efile_prefix Retrieves the prefix for external raw data storage files as set in the dataset access property list
H5Pset_virtual_prefix Sets prefix to be applied to VDS source file paths
H5Pget_virtual_prefix Retrieves prefix applied to VDS source file paths
See the Release.txt file for details.
Tools New options were added to the h5clear utility:
–filesize Print the file’s EOA and EOF –increment=C Set the file’s EOA to the maximum of (EOA, EOF) + C for the file
C is >= 0; C is optional and will default to 1M when not set
A new option was added to h5diff:
–enable-error-stack Enable the error stack
Compatibility Notes and Report
See the API compatibility report between 1.10.4 and 1.10.3 for details.
Release 1.10.1 versus 1.10.0
This section lists interface-level changes and other user-visible changes in behavior in the transition from HDF5 Release 1.10.0 (and HDF5-1.10.0-patch1) to Release 1.10.1.
New Features Several new features are introduced in HDF5 Release 1.10.1.
Metadata Cache Image
Metadata Cache Evict on Close
Paged Aggregation
Page Buffering
New Features, including associated C Functions The following features are described and documented in New Features in HDF5 Release 1.10. Each new feature in 1.10.1 is listed below along with the associated C functions:
Metadata Cache Image:
| Function | Description |
|---|---|
| H5Pget_mdc_image_config | |
| Retrieves the metadata cache image configuration values for a file access property list. | |
| H5Pset_mdc_image_config | |
| Sets the metadata cache image option for a file access property list. | |
| H5Fget_mdc_image_info | |
| Gets information about a metadata cache image if it exists. |
Metadata Cache Evict on Close:
| Function | Description |
|---|---|
| H5Pget_evict_on_close | |
| Retrieves the property list setting that determines whether an HDF5 object will be evicted from the library’s metadata cache when it is closed. | |
| H5Pset_evict_on_close | |
| Controls the library’s behavior of evicting metadata associated with a closed object. |
Paged Aggregation:
| Function | Description |
|---|---|
| H5Pget_file_space_page_size | |
| Retrieves the file space page size for a file creation property list. | |
| H5Pset_file_space_page_size | |
| Sets the file space page size (used with paged aggregation) for a file creation property list. | |
| H5Pget_file_space_strategy | |
| Retrieves the file space handling strategy for a file creation property list. | |
| H5Pset_file_space_strategy | |
| Sets the file space allocation strategy for a file creation property list. |
Page Buffering:
| Function | Description |
|---|---|
| H5Pget_page_buffer_size | |
| Retrieves the maximum size for the page buffer and the minimum percentage for metadata and raw data pages. | |
| H5Pset_page_buffer_size | |
| Sets the maximum size for the page buffer and the minimum percentage for metadata and raw data pages. | |
| H5Fget_page_buffering_stats | |
| Retrieves statistics about page access when it is enabled. | |
| H5Freset_page_buffering_stats | |
| Resets the page buffer statistics. |
New and Changed Functions, Classes, Subroutines, Wrappers, and Macros In the C Interface (main library)
The following new C functions were added:
| Function | Description |
|---|---|
| H5PLappend | |
| funcdesc | |
| H5PLget | |
| funcdesc | |
| H5PLinsert | |
| funcdesc | |
| H5PLprepend | |
| funcdesc | |
| H5PLremove | |
| funcdesc | |
| H5PLreplace | |
| funcdesc | |
| H5PLsize | |
| funcdesc |
In the C++ API
New member functions were added to provide const versions. For example, these methods,
ArrayType::getArrayDims ( hsize_t* dims ) const
ArrayType::getArrayNDims ( ) const
replace these:
ArrayType::getArrayDims(hsize_t* dims)
ArrayType::getArrayNDims()
Several functions were moved to other classes. For example, this method,
H5Location::openDataSet (char const* name) const
replaces:
CommonFG::openDataSet (char const* name) const
PLEASE review the Compatibility report below for complete information on the C++ changes in this release.
Compatibility Report
See the API compatibility report between 1.10.1 and 1.10.0-patch1 for details.
Release 1.10.0 versus Release 1.8.16
This section lists interface-level changes and other user-visible changes in behavior in the transition from HDF5 Release 1.8.16 to Release 1.10.0.
Changed Type hid_t
Changed from a 32-bit to a 64-bit value.
hid_t is the type is used for all HDF5 identifiers. This change, which is necessary to accommodate the capacities of modern computing systems, therefore affects all HDF5 applications. If an application has been using HDF5’s hid_t the type, recompilation will normally be sufficient to take advantage of HDF5 Release 1.10.0. If an application uses an integer type instead of HDF5’s hid_t type, those identifiers must be changed to a 64-bit type when the application is ported to the 1.10.x series.
New Features and Feature Sets Several new features are introduced in HDF5 Release 1.10.0.
Single-Writer / Multiple-Reader or SWMR
Collective Metadata I/O
Fine-tuning the metadata cache
File Space Management
Virtual Datasets or VDS
Partial Edge Chunk Options
Relative Pathnames for External Links
Property List Encoding and Decoding
More substantial lists follow, including new and modified C functions and Fortran subroutines.
New Features, including associated C Functions and Fortran Wrappers The following features are described and documented in New Features in HDF5 Release 1.10.0. On this page, we list each feature and its associated C functions and Fortran wrappers.
Single-writer / Multiple-reader, commonly called SWMR:
H5Fstart_swmr_write
Enables SWMR writing mode for a file.
H5DOappend
Appends data to a dataset along a specified dimension. (This is a high-level API.)
| H5Pget_append_flush |
| Retrieves the values of the append property that is set up in the dataset access property list. |
| H5Pset_append_flush |
| Sets two actions to perform when the size of a dataset’s dimension being appended reaches a specified boundary. |
| H5Pget_object_flush_cb |
| Retrieves the object flush property values from the file access property list. |
| H5Pset_object_flush_cb |
| Sets a callback function to invoke when an object flush occurs in the file. |
| H5Odisable_mdc_flushes |
| Prevents metadata entries for an HDF5 object from being flushed from the metadata cache to storage. |
| H5Oenable_mdc_flushes |
| Returns the cache entries associated with an HDF5 object to the default metadata flush and eviction algorithm. |
| H5Oare_mdc_flushes_disabled |
| Determines if an HDF5 object (dataset, group, committed datatype) has had flushes of metadata entries disabled. |
| H5Fdisable_mdc_flushes |
| Globally prevents dirty metadata entries from being flushed from the metadata cache to storage. |
| H5Fenable_mdc_flushes |
| Returns a file’s metadata cache to the standard eviction and flushing algorithm. |
| H5Fare_mdc_flushes_disabled |
| Determines if flushes have been globally disabled for a file’s metadata cache. |
| H5Fget_mdc_flush_disabled_obj_ids |
| Returns a list of all object identifiers for which flushes have been disabled in a file’s metadata cache. |
Command-line Tools:
h5watch
Allows users to output new records appended to a dataset under SWMR access as it grows. The functionality is similar to the Unix user command tail with the follow option, which outputs appended data as the file grows.
h5format_convert
This tool allows users to convert the indexing type of a chunked dataset made with a 1.10.x version of the HDF5 Library when the latest file format is used to the 1.8.x version 1 B-tree indexing type. For example, datasets created using SWMR access, can be converted to be accessed by the HDF5 1.18 library and tools. The tool does not rewrite raw data, but it does rewrite HDF5 metadata.
Collective Metadata I/O:
H5Pset_coll_metadata_write
h5pset_coll_metadata_write_f
Establishes I/O mode property setting, collective or independent, for metadata writes.
H5Pget_coll_metadata_write h5pget_coll_metadata_write_f
Retrieves I/O mode property setting for metadata writes.
H5Pset_all_coll_metadata_ops
h5pset_all_coll_metadata_ops_f
Establishes I/O mode, collective or independent, for metadata read operations.
H5Pget_all_coll_metadata_ops h5pget_all_coll_metadata_ops_f
Retrieves I/O mode for metadata read operations.
Fine-tuning the Metadata Cache:
H5Fget_metadata_read_retries_info
Retrieves the collection of read retries for metadata items with checksum.
H5Pget_metadata_read_attempts
Retrieves the number of read attempts from a file access property list.
H5Pset_metadata_read_attempts
Sets the number of read attempts in a file access property list.
H5Dflush
Causes all buffers associated with a dataset to be immediately written to disk without removing the data from the cache.
H5Drefresh
Causes all buffers associated with a dataset to be cleared and immediately re-loaded with updated contents from disk storage.
H5Gflush
Causes all buffers associated with a group to be immediately flushed to disk without removing the data from the cache.
H5Grefresh
Causes all buffers associated with a group to be cleared and immediately re-loaded with updated contents from disk storage.
H5Oflush
Causes all buffers associated with an object to be immediately flushed to disk without removing the data from the cache.
H5Orefresh
Causes all buffers associated with an object to be cleared and immediately re-loaded with updated contents from disk storage.
H5Tflush
Causes all buffers associated with a committed datatype to be immediately flushed to disk without removing the data from the cache.
H5Trefresh
Causes all buffers associated with a committed datatype to be cleared and immediately re-loaded with updated contents from disk storage.
H5Fget_intent
Determines the read/write or read-only status of a file.
Logging APIs:
H5Pset_mdc_log_options
Sets metadata cache logging options.
H5Pget_mdc_log_options
Gets metadata cache logging options.
H5Fstart_mdc_logging
Starts logging metadata cache events if logging was previously enabled.
H5Fstop_mdc_logging
Stops logging metadata cache events if logging was previously enabled and is currently ongoing.
H5Pget_mdc_logging_status
Gets the current metadata cache logging status.
File Space Management:
H5Fget_free_sections
Retrieves free-space section information for a file.
H5Fget_freespace
Returns the amount of free space in a file.
H5Fget_info2
Returns global information for a file.
H5Pset_file_space
Sets the file space management strategy and/or the free-space section threshold for an HDF5 file.
H5Pget_file_space
Retrieves the file space management strategy and/or the free-space section threshold for an HDF5 file.
The following tool has been modified to preserve or modify file freepace information appropriately when processing files employing the VDS feature:
h5repack
Repacks HDF5 files with various options, including the ability to change the applied filters. This version of h5repack understands the file free space feature and handles the file and metadata appropriately.
Virtual Dataset or VDS:
H5Pset_virtual h5pset_virtual_f
Sets the mapping between virtual and source datasets.
H5Pget_virtual_count h5pget_virtual_count_f
Retrieves the number of mappings for the virtual dataset.
H5Pget_virtual_vspace h5pget_virtual_vspace_f
Retrieves a dataspace identifier for the selection within the virtual dataset used in the mapping.
H5Pget_virtual_srcspace h5pget_virtual_srcspace_f
Retrieves a dataspace identifier for the selection within the source dataset used in the mapping.
H5Pget_virtual_dsetname h5pget_virtual_dsetname_f
Retrieves the name of a source dataset used in the mapping.
H5Pget_virtual_filename h5pget_virtual_filename_f
Retrieves the filename of a source dataset used in the mapping.
H5Pset_virtual_printf_gap h5pset_virtual_printf_gap_f
Sets maximum number of missing source files and/or datasets with printf-style names when getting the extent of an unlimited virtual dataset.
H5Pget_virtual_printf_gap h5pget_virtual_printf_gap_f
Returns maximum number of missing source files and/or datasets with printf-style names when getting the extent for an unlimited virtual dataset.
H5Pset_virtual_view h5pset_virtual_view_f
Sets the view of the virtual dataset to include or exclude missing mapped elements.
H5Pget_virtual_view h5pget_virtual_view_f
Retrieves the view of a virtual dataset.
Supporting Functions:
H5Sis_regular_hyperslab h5sis_regular_hyperslab_f
Determines whether a hyperslab selection is regular.
H5Sget_regular_hyperslab
h5sget_regular_hyperslab_f
Retrieves a regular hyperslab selection.
Modified Functions: The following pre-exising functions have been modified to understand virtual datasets.
H5Pset_layout h5pset_layout_f
Specifies the layout to be used for a dataset. Virtual dataset, H5D_VIRTUAL, has been added to the list of layouts available through this function.
H5Pget_layout h5pget_layout_f
Retrieves the layout in use for a dataset. Virtual dataset, H5D_VIRTUAL, has been added to the list of layouts.
Partial Edge Chunks:
H5Pset_chunk_opts
Sets a partial edge chunk option in a dataset access property list.
H5Pget_chunk_opts
Retrieves partial edge chunk option setting from a dataset access property list.
Relative Pathnames for External Links:
H5Pset_elink_prefix
These functions enable the user to specify the locations of external files. (These functions are not yet documented.)
H5Pget_elink_prefix
Property List Encoding and Decoding:
H5Pencode
H5Pdecode
Additional New Functions:
The following new functions appear in HDF5 Release 1.10.0 but are not yet documented:
H5Dformat_convert
H5Dget_chunk_index_type
H5FDlock
H5FDunlock
H5Fformat_convert
H5LDget_dset_dims
H5LDget_dset_elmts
H5LDget_dset_type_size New and Changed Elements of the Packet Table (H5PT) High-level API In the C Interface
Replacement functions:
H5PTcreate
Takes a property list identifier to provide flexibility on creation properties.
H5PTcreate_fl has been removed.
H5PTfree_vlen_buff
Replaces H5PTfree_vlen_readbuff.
New functions:
Two accessor functions have been added.
H5PTget_dataset
Returns the identifier of the dataset associated a packet table.
H5PTget_type
Returns the identifier of the datatype used by a packet table.
H5PTis_varlen
Determines whether a type is variable-length.
In the C++ Interface
Overloaded constructor
An overloaded constructor has been added.
FL_PacketTable
Takes a property list identifier to provide flexibility on creation properties.</dd>
H5PTfree_vlen_buff
Replaces H5PTfree_vlen_readbuff.
Accessor wrappers
Two accessor wrappers are added to class PacketTable.
PacketTable::GetDataset()
Returns the identifier of the dataset associated a packet table.
PacketTable::GetDatatype()
Returns the identifier of the datatype used by a packet table.
Other wrappers
PacketTable::FreeBuff()
Replaces VL_PacketTable::FreeReadBuff().
PacketTable::IsVariableLength()
Replaces VL_PacketTable::IsVariableLength().
Overloaded functions:
Where a member functions has a char* as an argument, an overloaded functions has been added to provide the const char* argument.
The existing version will be deprecated in a future release.
Java Interface Changes Integration into Main HDF5 Library
The Java HDF5 JNI library has been integrated into the HDF5 repository.
Configure option:
–enable-java
CMake option:
HDF5_BUILD_JAVA:BOOL=ON
Prior to the 1.10.x series, the HDF5 Java tools were built from an independent repository and were not as fully integrated with HDF5. were built from an independent repository and were not as fully integrated with HDF5.
Package Hierarchy Change
The package hierarchy has changed to hdf.hdflib.hdf5.
Prior to the 1.10.x series, the hierarchy was ncsa.hdf.hdflib.hdf5.
New Java APIs
A number of new APIs have been added in the Java interface, including APIs for the VDS and SWMR features.
Functions with Changed Behavior H5Lexists
The behavior of this function has changed in this release. When testing the pathname / (a slash representing the root of an HDF5 file) H5Lexists now returns successfully with the value 1 (one). See the entry in the HDF5 Reference Manual for H5Lexists for more information.
API Compatibility See API Compatibility Macros in HDF5 for details on the following.
New API Compatibility Flag
A new v18 flag was added enabling the building of HDF5 such that the default API is compatible with the HDF5 Release 1.8.x API: –with-default-api-version=v18
New versioned functions and associated compatibility macros
Two functions and a struct have been converted to a versioned form in this release. Compatibility macros have been created for each.
H5Fget_info
The original function is renamed to H5Fget_info1 and deprecated.
A new version of the function, H5Fget_info2, is introduced.
The compatibility macro H5Fget_info is introduced.
H5F_info_t
This is the struct used by the H5Fget_info functions and macro.
The original struct is renamed to H5F_info1_t and deprecated.
A new version of the struct, H5F_info2_t, is introduced.
The compatibility macro H5F_info_t is introduced.
H5Rdereference
The original function is renamed to H5Rdereference1 and deprecated.
A new version of the function, H5Rdereference2, is introduced.
The compatibility macro H5Rdereference is introduced.
Autotools Configuration and Large File Support
Autotools configuration has been extensively reworked and autotool’s handling of large file support has been overhauled in this release.
See the following sections in RELEASE.txt:
- Autotools Configuration Has Been Extensively Reworked
- LFS Changes
RELEASE.txt can be found in the release_docs/ subdirectory at the root level of the HDF5 code distribution.
Compatibility Report and Comments
Compatibility report for Release 1.10.0 versus Release 1.8.16
Comments regarding the report
In the C interface, the hid_t change from 32-bit to 64-bit was made in order to address a performance problem that arose when the library “ran out” of valid object identifiers to issue and thus needed to employ an expensive algorithm to find previously issued identifiers that could be re-issued. This problem is avoided by switching the size of the hid_t type to 64-bit integers instead of 32-bit integers in order to make the pool of available integers significantly larger. (H5E_major_t and H5E_minor_t are aliased to hid_t which is why they changed size as well). (An alternate solution to this problem was applied in release HDF5 1.8.5 but this is the cleaner/preferred solution and had to wait until 1.10.0 to be included).
hbool_t will now be defined as a _Bool type when configure determines that it’s available.
Public structs that have members of type hid_t or hbool_t are affected by the above changes accordingly.
The H5Fget_info function was renamed due to the introduction of a newer version of the function which returns additional information. The H5Rdereference function was renamed due to the introduction of a newer version of the function which allows a data access property list to be passed in. Both changes are accompanied with compatibility macros, so while existing code will need to be recompiled in order to use the newer library version, these functions do not need to be changed in application code using them provided that the HDF5 API compatibility macros are configured appropriately.