HDF5 1.14.5
API Reference
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Macros | |
#define | H5D_CHUNK_CACHE_NSLOTS_DEFAULT SIZE_MAX |
#define | H5D_CHUNK_CACHE_NBYTES_DEFAULT SIZE_MAX |
#define | H5D_CHUNK_CACHE_W0_DEFAULT (-1.0) |
#define | H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS (0x0002u) |
#define | H5D_CHUNK_BTREE H5D_CHUNK_IDX_BTREE |
#define | H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag" |
#define | H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters" |
#define | H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset" |
#define | H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize" |
#define | H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME "direct_chunk_read_flag" |
#define | H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME "direct_chunk_read_offset" |
#define | H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME "direct_chunk_read_filters" |
Typedefs | |
typedef herr_t(* | H5D_append_cb_t) (hid_t dataset_id, hsize_t *cur_dims, void *op_data) |
Callback for H5Pset_append_flush() | |
typedef herr_t(* | H5D_operator_t) (void *elem, hid_t type_id, unsigned ndim, const hsize_t *point, void *operator_data) |
Callback for H5Diterate() | |
typedef herr_t(* | H5D_scatter_func_t) (const void **src_buf, size_t *src_buf_bytes_used, void *op_data) |
Callback for H5Dscatter() | |
typedef herr_t(* | H5D_gather_func_t) (const void *dst_buf, size_t dst_buf_bytes_used, void *op_data) |
Callback for H5Dgather() | |
typedef int(* | H5D_chunk_iter_op_t) (const hsize_t *offset, unsigned filter_mask, haddr_t addr, hsize_t size, void *op_data) |
Callback for H5Dchunk_iter() | |
Functions | |
hid_t | H5Dcreate2 (hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id) |
Creates a new dataset and links it into the file. | |
hid_t | H5Dcreate_async (hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id, hid_t es_id) |
hid_t | H5Dcreate_anon (hid_t loc_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, hid_t dapl_id) |
Creates a dataset in a file without linking it into the file structure. | |
hid_t | H5Dopen2 (hid_t loc_id, const char *name, hid_t dapl_id) |
Opens an existing dataset. | |
hid_t | H5Dopen_async (hid_t loc_id, const char *name, hid_t dapl_id, hid_t es_id) |
hid_t | H5Dget_space (hid_t dset_id) |
Returns an identifier for a copy of the dataspace for a dataset. | |
hid_t | H5Dget_space_async (hid_t dset_id, hid_t es_id) |
herr_t | H5Dget_space_status (hid_t dset_id, H5D_space_status_t *allocation) |
Determines whether space has been allocated for a dataset. | |
hid_t | H5Dget_type (hid_t dset_id) |
Returns an identifier for a copy of the datatype for a dataset. | |
hid_t | H5Dget_create_plist (hid_t dset_id) |
Returns an identifier for a copy of the dataset creation property list for a dataset. | |
hid_t | H5Dget_access_plist (hid_t dset_id) |
Returns the dataset access property list associated with a dataset. | |
hsize_t | H5Dget_storage_size (hid_t dset_id) |
Returns the amount of storage allocated for a dataset. | |
herr_t | H5Dget_chunk_storage_size (hid_t dset_id, const hsize_t *offset, hsize_t *chunk_bytes) |
Returns the amount of storage allocated within the file for a raw data chunk in a dataset. | |
herr_t | H5Dget_num_chunks (hid_t dset_id, hid_t fspace_id, hsize_t *nchunks) |
Retrieves number of chunks that have nonempty intersection with a specified selection. | |
herr_t | H5Dget_chunk_info_by_coord (hid_t dset_id, const hsize_t *offset, unsigned *filter_mask, haddr_t *addr, hsize_t *size) |
Retrieves information about a chunk specified by its coordinates. | |
herr_t | H5Dchunk_iter (hid_t dset_id, hid_t dxpl_id, H5D_chunk_iter_op_t cb, void *op_data) |
Iterate over all chunks of a chunked dataset. | |
herr_t | H5Dget_chunk_info (hid_t dset_id, hid_t fspace_id, hsize_t chk_idx, hsize_t *offset, unsigned *filter_mask, haddr_t *addr, hsize_t *size) |
Retrieves information about a chunk specified by its index. | |
haddr_t | H5Dget_offset (hid_t dset_id) |
Returns dataset address in file. | |
herr_t | H5Dread (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf) |
Reads raw data from a dataset into a provided buffer. | |
herr_t | H5Dread_multi (size_t count, hid_t dset_id[], hid_t mem_type_id[], hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, void *buf[]) |
Reads raw data from a set of datasets into the provided buffers. | |
herr_t | H5Dread_async (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf, hid_t es_id) |
herr_t | H5Dread_multi_async (size_t count, hid_t dset_id[], hid_t mem_type_id[], hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, void *buf[], hid_t es_id) |
herr_t | H5Dwrite (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf) |
Writes raw data from a buffer to a dataset. | |
herr_t | H5Dwrite_multi (size_t count, hid_t dset_id[], hid_t mem_type_id[], hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, const void *buf[]) |
Writes raw data from a set buffers to a set of datasets. | |
herr_t | H5Dwrite_async (hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf, hid_t es_id) |
herr_t | H5Dwrite_multi_async (size_t count, hid_t dset_id[], hid_t mem_type_id[], hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, const void *buf[], hid_t es_id) |
herr_t | H5Dwrite_chunk (hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *offset, size_t data_size, const void *buf) |
Writes a raw data chunk from a buffer directly to a dataset in a file. | |
herr_t | H5Dread_chunk (hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, uint32_t *filters, void *buf) |
Reads a raw data chunk directly from a dataset in a file into a buffer. | |
herr_t | H5Diterate (void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data) |
Iterates over all selected elements in a dataspace. | |
herr_t | H5Dvlen_get_buf_size (hid_t dset_id, hid_t type_id, hid_t space_id, hsize_t *size) |
Determines the number of bytes required to store variable-length (VL) data. | |
herr_t | H5Dfill (const void *fill, hid_t fill_type_id, void *buf, hid_t buf_type_id, hid_t space_id) |
Fills dataspace elements with a fill value in a memory buffer. | |
herr_t | H5Dset_extent (hid_t dset_id, const hsize_t size[]) |
Changes the sizes of a dataset's dimensions. | |
herr_t | H5Dset_extent_async (hid_t dset_id, const hsize_t size[], hid_t es_id) |
herr_t | H5Dflush (hid_t dset_id) |
Flushes all buffers associated with a dataset to disk. | |
herr_t | H5Drefresh (hid_t dset_id) |
Refreshes all buffers associated with a dataset. | |
herr_t | H5Dscatter (H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf) |
Scatters data into a selection within a memory buffer. | |
herr_t | H5Dgather (hid_t src_space_id, const void *src_buf, hid_t type_id, size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data) |
Gathers data from a selection within a memory buffer raw data chunk in a dataset. | |
herr_t | H5Dclose (hid_t dset_id) |
Closes the specified dataset. | |
herr_t | H5Dclose_async (hid_t dset_id, hid_t es_id) |
hid_t | H5Dcreate1 (hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t dcpl_id) |
Creates a dataset at the specified location. | |
hid_t | H5Dopen1 (hid_t loc_id, const char *name) |
Opens an existing dataset. | |
herr_t | H5Dextend (hid_t dset_id, const hsize_t size[]) |
Extends a dataset. | |
herr_t | H5Dvlen_reclaim (hid_t type_id, hid_t space_id, hid_t dxpl_id, void *buf) |
Reclaims variable-length (VL) datatype memory buffers. | |
#define H5D_CHUNK_BTREE H5D_CHUNK_IDX_BTREE |
#define H5D_CHUNK_CACHE_NBYTES_DEFAULT SIZE_MAX |
#define H5D_CHUNK_CACHE_NSLOTS_DEFAULT SIZE_MAX |
#define H5D_CHUNK_CACHE_W0_DEFAULT (-1.0) |
#define H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS (0x0002u) |
Bit flags for the H5Pset_chunk_opts() and H5Pget_chunk_opts()
#define H5D_XFER_DIRECT_CHUNK_READ_FILTERS_NAME "direct_chunk_read_filters" |
#define H5D_XFER_DIRECT_CHUNK_READ_FLAG_NAME "direct_chunk_read_flag" |
#define H5D_XFER_DIRECT_CHUNK_READ_OFFSET_NAME "direct_chunk_read_offset" |
#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize" |
#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters" |
#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag" |
#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset" |
Callback for H5Pset_append_flush()
[in] | dataset_id | Dataset identifier |
[in] | cur_dims | The current extent of the dataset's dimensions |
[in,out] | op_data | User context |
typedef int(* H5D_chunk_iter_op_t) (const hsize_t *offset, unsigned filter_mask, haddr_t addr, hsize_t size, void *op_data) |
Callback for H5Dchunk_iter()
[in] | offset | Logical position of the chunk's first element in units of dataset elements |
[in] | filter_mask | Bitmask indicating the filters used when the chunk was written |
[in] | addr | Chunk address in the file, taking the user block (if any) into account |
[in] | size | Chunk size in bytes, 0 if the chunk does not exist |
[in,out] | op_data | Pointer to any user-defined data associated with the operation. |
typedef herr_t(* H5D_gather_func_t) (const void *dst_buf, size_t dst_buf_bytes_used, void *op_data) |
Callback for H5Dgather()
[in] | dst_buf | Pointer to the destination buffer which has been filled with the next set of elements gathered. This will always be identical to the dst_buf passed to H5Dgather() |
[in] | dst_buf_bytes_used | Pointer to the number of valid bytes in dst_buf . This number must be a multiple of the datatype size. |
[in,out] | op_data | User-defined pointer to data required by the callback function; a pass-through of the op_data pointer provided with the H5Dgather() function call. |
The callback function should process, store, or otherwise make use of the data returned in dst_buf before it returns, because the buffer will be overwritten unless it is the last call to the callback. This function will be repeatedly called until all gathered elements have been passed to the callback in dst_buf. The callback function should return zero (0) to indicate success, and a negative value to indicate failure.
typedef herr_t(* H5D_operator_t) (void *elem, hid_t type_id, unsigned ndim, const hsize_t *point, void *operator_data) |
Callback for H5Diterate()
[in,out] | elem | Pointer to the memory buffer containing the current dataset element |
[in] | type_id | Datatype identifier of the elements stored in elem |
[in] | ndim | Number of dimensions for the point array |
[in] | point | Array containing the location of the element within the original dataspace |
[in,out] | operator_data | Pointer to any user-defined data associated with the operation |
typedef herr_t(* H5D_scatter_func_t) (const void **src_buf, size_t *src_buf_bytes_used, void *op_data) |
Callback for H5Dscatter()
[out] | src_buf | Pointer to the buffer holding the next set of elements to scatter. On entry, the value of where src_buf points to is undefined. The callback function should set src_buf to point to the next set of elements. |
[out] | src_buf_bytes_used | Pointer to the number of valid bytes in src_buf . On entry, the value where src_buf_bytes_used points to is undefined. The callback function should set src_buf_bytes_used to the of valid bytes in src_buf . This number must be a multiple of the datatype size. |
[in,out] | op_data | User-defined pointer to data required by the callback function. A pass-through of the op_data pointer provided with the H5Dscatter() function call. |
The callback function should always return at least one element in src_buf
, and must not return more elements than are remaining to be scattered. This function will be repeatedly called until all elements to be scattered have been returned. The callback function should return zero (0) to indicate success, and a negative value to indicate failure.
enum H5D_alloc_time_t |
enum H5D_chunk_index_t |
Types of chunk index data structures
Enumerator | |
---|---|
H5D_CHUNK_IDX_BTREE | v1 B-tree index (default) |
H5D_CHUNK_IDX_SINGLE | Single Chunk index (cur dims[]=max dims[]=chunk dims[]; filtered & non-filtered) |
H5D_CHUNK_IDX_NONE | Implicit: No Index (H5D_ALLOC_TIME_EARLY, non-filtered, fixed dims) |
H5D_CHUNK_IDX_FARRAY | Fixed array (for 0 unlimited dims) |
H5D_CHUNK_IDX_EARRAY | Extensible array (for 1 unlimited dim) |
H5D_CHUNK_IDX_BT2 | v2 B-tree index (for >1 unlimited dims) |
H5D_CHUNK_IDX_NTYPES | This one must be last! |
enum H5D_fill_time_t |
enum H5D_fill_value_t |
enum H5D_layout_t |
enum H5D_space_status_t |
Values for the status of space allocation
enum H5D_vds_view_t |