Index (HDFView 3.1.1)

A B C D E F G H I L M N O P R S T U V W
All Classes All Packages

A

addDataView(DataView) - Method in class hdf.view.HDFView
addExtension(String) - Method in class hdf.view.DefaultFileFilter: Adds a filetype "dot" extension to filter against.
addFileExtension(String) - Static method in class hdf.object.FileFormat: Adds file extension(s) to the list of file extensions for supported file formats.
addFileFormat(String, FileFormat) - Static method in class hdf.object.FileFormat: Adds a FileFormat with specified key to the list of supported formats.
addFilteredImageValue(Number) - Method in class hdf.object.ScalarDS: Add a value that will be filtered out in an image.
addToMemberList(HObject) - Method in class hdf.object.Group: Adds an object to the member list of this group in memory.
AND - hdf.view.ViewProperties.BITMASK_OP
applyBitmask(Object, BitSet, ViewProperties.BITMASK_OP) - Static method in class hdf.view.Tools: Apply bitmask to a data array.
arrayDims - Variable in class hdf.object.Datatype: The dimensions of the ARRAY element of an ARRAY datatype.
Attribute - Class in hdf.object: An attribute is a (name, value) pair of metadata attached to a primary data object such as a dataset, group or named datatype.
Attribute(HObject, String, Datatype, long[]) - Constructor for class hdf.object.Attribute: Create an attribute with specified name, data type and dimension sizes.
Attribute(HObject, String, Datatype, long[], Object) - Constructor for class hdf.object.Attribute: Create an attribute with specific name and value.
autoContrastApply(Object, Object, double[], double[], boolean) - Static method in class hdf.view.Tools: Apply autocontrast parameters to the original data in place (destructive)
autoContrastCompute(Object, double[], boolean) - Static method in class hdf.view.Tools: Computes autocontrast parameters (gain equates to contrast and bias equates to brightness) for integers.
autoContrastComputeMinMax(Object, double[]) - Static method in class hdf.view.Tools: Computes autocontrast parameters by
autoContrastConvertImageBuffer(Object, byte[], boolean) - Static method in class hdf.view.Tools: Converts image raw data to bytes.

B

baseType - Variable in class hdf.object.Datatype: The base datatype of this datatype (null if this datatype is atomic).
BITMASK - hdf.view.ViewProperties.DATA_VIEW_KEY
BITMASKOP - hdf.view.ViewProperties.DATA_VIEW_KEY
BORDER - hdf.view.ViewProperties.DATA_VIEW_KEY
breadthFirstMemberList() - Method in class hdf.object.Group
byteToString(byte[], int) - Static method in class hdf.object.Dataset: Converts an array of bytes into an array of Strings for a fixed string dataset.

C

CHAR - hdf.view.ViewProperties.DATA_VIEW_KEY
Chart - Class in hdf.view: ChartView displays a histogram/line chart of selected row/column of table data or image data.
Chart(Shell, String, int, double[][], double[], double[]) - Constructor for class hdf.view.Chart: Constructs a new ChartView given data and data ranges.
chartP - Variable in class hdf.view.Chart: Panel that draws plot of data values.
checkNewFile(String, String) - Static method in class hdf.view.Tools: Check and find a non-exist file.
checkValidJavaArrayIndex(long) - Static method in class hdf.view.Tools: Since Java does not allow array indices to be larger than int type, check the given value to see if it is within the valid range of a Java int.
chunkSize - Variable in class hdf.object.Dataset: The array of dimension sizes for a chunk.
CLASS_ARRAY - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_BITFIELD - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_CHAR - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_COMPOUND - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_ENUM - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_FLOAT - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_INTEGER - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_NO_CLASS - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_OPAQUE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_REFERENCE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_STRING - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_TIME - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
CLASS_VLEN - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
clear() - Method in class hdf.object.Dataset: Clears memory held by the dataset, such as the data buffer.
clear() - Method in class hdf.object.Group: Clears up member list and other resources in memory for the group.
clearData() - Method in class hdf.object.Attribute
clearData() - Method in interface hdf.object.DataFormat: Clears the current data buffer in memory and forces the next read() to load the data from file.
clearData() - Method in class hdf.object.Dataset: Clears the current data buffer in memory and forces the next read() to load the data from file.
clearData() - Method in class hdf.object.ScalarDS
close() - Method in class hdf.object.FileFormat: Closes file associated with this instance.
close(long) - Method in class hdf.object.Attribute
close(long) - Method in class hdf.object.Datatype: Closes a datatype identifier.
close(long) - Method in class hdf.object.HObject: Closes access to the object.
closeFile(FileFormat) - Method in class hdf.view.HDFView
CompoundDataFormat - Interface in hdf.object: An interface that provides general operations for data with a Compound datatype.
CompoundDS - Class in hdf.object: A CompoundDS is a dataset with compound datatype.
CompoundDS(FileFormat, String, String) - Constructor for class hdf.object.CompoundDS: Constructs a CompoundDS object with the given file, dataset name and path.
CompoundDS(FileFormat, String, String, long[]) - Constructor for class hdf.object.CompoundDS: Deprecated.
Not for public use in the future.
Using CompoundDS(FileFormat, String, String)
compoundMemberNames - Variable in class hdf.object.Datatype: The list of names of members of a compound Datatype.
compoundMemberOffsets - Variable in class hdf.object.Datatype: The list of offsets of members of a compound Datatype.
compoundMemberTypes - Variable in class hdf.object.Datatype: The list of types of members of a compound Datatype.
compression - Variable in class hdf.object.Dataset: The compression information.
COMPRESSION_GZIP_TXT - Static variable in class hdf.object.Dataset
computeStatistics(Object, double[], Object) - Static method in class hdf.view.Tools: Computes mean and standard deviation of a data array
CONVERTBYTE - hdf.view.ViewProperties.DATA_VIEW_KEY
convertByteToString - Variable in class hdf.object.Dataset: Flag to indicate if the byte[] array is converted to strings
convertedBuf - Variable in class hdf.object.Dataset: The array that holds the converted data of unsigned C-type integers.
convertFromUnsignedC() - Method in class hdf.object.Attribute: Converts the data values of this Attribute to appropriate Java integers if they are unsigned integers.
convertFromUnsignedC() - Method in interface hdf.object.DataFormat: Converts the data values of this data object to appropriate Java integers if they are unsigned integers.
convertFromUnsignedC() - Method in class hdf.object.ScalarDS: Converts the data values of this dataset to appropriate Java integer if they are unsigned integers.
convertFromUnsignedC(Object) - Static method in class hdf.object.Dataset: Deprecated.
Not for public use in the future.
Using Dataset.convertFromUnsignedC(Object, Object)
convertFromUnsignedC(Object, Object) - Static method in class hdf.object.Dataset: Converts one-dimension array of unsigned C-type integers to a new array of appropriate Java integer in memory.
convertImageToHDF(String, String, String, String) - Static method in class hdf.view.Tools: Converts an image file into HDF4/5 file.
convertToUnsignedC() - Method in class hdf.object.Attribute: Converts Java integer data values of this Attribute back to unsigned C-type integer data if they are unsigned integers.
convertToUnsignedC() - Method in interface hdf.object.DataFormat: Converts Java integer data values of this data object back to unsigned C-type integer data if they are unsigned integers.
convertToUnsignedC() - Method in class hdf.object.ScalarDS: Converts Java integer data of this dataset back to unsigned C-type integer data if they are unsigned integers.
convertToUnsignedC(Object) - Static method in class hdf.object.Dataset: Deprecated.
Not for public use in the future.
Using Dataset.convertToUnsignedC(Object, Object)
convertToUnsignedC(Object, Object) - Static method in class hdf.object.Dataset: Converts the array of converted unsigned integers back to unsigned C-type integer data in memory.
convertUINT64toBigInt(Long) - Static method in class hdf.view.Tools: Converts unsigned 64-bit integer data to a BigInteger since Java does not have unsigned types.
copy(Group, String, long[], Object) - Method in class hdf.object.Attribute
copy(Group, String, long[], Object) - Method in class hdf.object.CompoundDS: Deprecated.
Not implemented for compound dataset.
copy(Group, String, long[], Object) - Method in class hdf.object.Dataset: Creates a new dataset and writes the data buffer to the new dataset.
copy(HObject, Group) - Method in class hdf.object.FileFormat: Deprecated.
As of 2.4, replaced by FileFormat.copy(HObject, Group, String)
To mimic the behavior originally provided by this method, call the replacement method with null as the 3rd parameter.
copy(HObject, Group, String) - Method in class hdf.object.FileFormat: Copies the source object to a new destination.
create(String) - Method in class hdf.object.FileFormat: Deprecated.
As of 2.4, replaced by FileFormat.createFile(String, int)
The replacement method has an additional parameter that controls the behavior if the file already exists. Use FileFormat.FILE_CREATE_DELETE as the second argument in the replacement method to mimic the behavior originally provided by this method.
CREATE - Static variable in class hdf.object.FileFormat: File access flag for creating/truncating with read-write permission.
createCompoundDS(String, Group, long[], long[], long[], int, String[], Datatype[], int[], Object) - Method in class hdf.object.FileFormat: Creates a new compound dataset in a file with/without chunking and compression.
createCompoundDS(String, Group, long[], String[], Datatype[], int[], Object) - Method in class hdf.object.FileFormat: Deprecated.
As of 2.4, replaced by FileFormat.createCompoundDS(String, Group, long[], long[], long[], int, String[], Datatype[], int[], Object)
The replacement method has additional parameters: maxdims, chunks, and gzip. To mimic the behavior originally provided by this method, call the replacement method with the following parameter list: ( name, pgroup, dims, null, null, -1, memberNames, memberDatatypes, memberSizes, data );
createDatatype(int, int, int, int) - Method in class hdf.object.FileFormat: Creates a new datatype in memory.
createDatatype(int, int, int, int, Datatype) - Method in class hdf.object.FileFormat: Creates a new datatype in memory.
createDatatype(int, int, int, int, Datatype, String) - Method in class hdf.object.FileFormat: Creates a named datatype in a file.
createDatatype(int, int, int, int, String) - Method in class hdf.object.FileFormat: Creates a named datatype in a file.
createFile(String, int) - Method in class hdf.object.FileFormat: Creates a file with the specified name and returns a new FileFormat implementation instance associated with the file.
createGcpl(int, int, int) - Method in class hdf.object.FileFormat: Creates the group creation property list identifier, gcpl.
createGrayPalette() - Static method in class hdf.view.Tools: Creates the gray palette of the indexed 256-color table.
createGrayWavePalette() - Static method in class hdf.view.Tools: Creates the gray wave palette of the indexed 256-color table.
createGroup(String, Group) - Method in class hdf.object.FileFormat: Creates a new group with specified name in existing group.
createGroup(String, Group, long...) - Method in class hdf.object.FileFormat: Creates a new group with specified name in existing group.
createImage(String, Group, Datatype, long[], long[], long[], int, int, int, Object) - Method in class hdf.object.FileFormat: Creates a new image in a file.
createIndexedImage(BufferedImage, byte[], byte[][], long, long) - Static method in class hdf.view.Tools: Creates a RGB indexed image of 256 colors.
createInstance(String, int) - Method in class hdf.object.FileFormat: Creates a FileFormat implementation instance with specified filename and access.
createLink(Group, String, HObject, int) - Method in class hdf.object.FileFormat: Creates a soft, hard or external link to an existing object in the open file.
createLink(Group, String, Object) - Method in class hdf.object.FileFormat: Creates a link to an existing object in the open file.
createLink(Group, String, String, int) - Method in class hdf.object.FileFormat: Creates a soft or external link to an object in a file that does not exist at the time the link is created.
createNative() - Method in class hdf.object.Datatype: Converts the datatype object to a native datatype.
createNaturePalette() - Static method in class hdf.view.Tools: Creates the nature palette of the indexed 256-color table.
createNewFile(String, String, String, List<FileFormat>) - Static method in class hdf.view.Tools: Create a new HDF file with default file creation properties
createPropertyFile(String, String) - Static method in class hdf.view.ViewProperties
createRainbowPalette() - Static method in class hdf.view.Tools: Creates the rainbow palette of the indexed 256-color table.
createReverseGrayPalette() - Static method in class hdf.view.Tools: Creates the reverse gray palette of the indexed 256-color table.
createScalarDS(String, Group, Datatype, long[], long[], long[], int, Object) - Method in class hdf.object.FileFormat
createScalarDS(String, Group, Datatype, long[], long[], long[], int, Object, Object) - Method in class hdf.object.FileFormat: Creates a new dataset in a file with/without chunking/compression.
createTrueColorImage(byte[], boolean, long, long) - Static method in class hdf.view.Tools: Creates a true color image.
createWavePalette() - Static method in class hdf.view.Tools: Creates the wave palette of the indexed 256-color table.
CRT_ORDER_INDEXED - Static variable in class hdf.object.Group
CRT_ORDER_TRACKED - Static variable in class hdf.object.Group

D

data - Variable in class hdf.object.Dataset: The memory buffer that holds the raw data array of the dataset.
data - Variable in class hdf.view.Chart: the data values of line points or histogram
DataFormat - Interface in hdf.object: An interface that provides general I/O operations for object data.
Dataset - Class in hdf.object: The abstract class provides general APIs to create and manipulate dataset objects, and retrieve dataset properties, datatype and dimension sizes.
Dataset(FileFormat, String, String) - Constructor for class hdf.object.Dataset: Constructs a Dataset object with a given file, name and path.
Dataset(FileFormat, String, String, long[]) - Constructor for class hdf.object.Dataset: Deprecated.
Not for public use in the future.
Using Dataset(FileFormat, String, String)
datatype - Variable in class hdf.object.Dataset: The datatype object of the dataset.
Datatype - Class in hdf.object: Datatype is an abstract class that defines datatype characteristics and APIs for a data type.
Datatype(int, int, int, int) - Constructor for class hdf.object.Datatype: Constructs a Datatype with specified class, size, byte order and sign.
Datatype(int, int, int, int, Datatype) - Constructor for class hdf.object.Datatype: Constructs a Datatype with specified class, size, byte order and sign.
Datatype(int, int, int, int, Datatype, Datatype) - Constructor for class hdf.object.Datatype: Constructs a Datatype with specified class, size, byte order and sign.
Datatype(long) - Constructor for class hdf.object.Datatype: Constructs a Datatype with a given native datatype identifier.
Datatype(long, Datatype) - Constructor for class hdf.object.Datatype: Constructs a Datatype with a given native datatype identifier.
Datatype(FileFormat, String, String) - Constructor for class hdf.object.Datatype: Constructs a named datatype with a given file, name and path.
Datatype(FileFormat, String, String, long[]) - Constructor for class hdf.object.Datatype: Deprecated.
Not for public use in the future.
Using Datatype(FileFormat, String, String)
datatypeClass - Variable in class hdf.object.Datatype: The class of the datatype.
datatypeDescription - Variable in class hdf.object.Datatype
datatypeOrder - Variable in class hdf.object.Datatype: The byte order of the datatype.
datatypeSign - Variable in class hdf.object.Datatype: The sign of the datatype.
datatypeSize - Variable in class hdf.object.Datatype: The size (in bytes) of the datatype.
debug(Object) - Method in class hdf.object.HObject: Print out debug information
DEFAULT_COMPOUND_DATASET_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties
DEFAULT_DATASET_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
DEFAULT_DATATYPE_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
DEFAULT_GROUP_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties: Default MetaDataView class names
DEFAULT_IMAGEVIEW_NAME - Static variable in class hdf.view.ViewProperties: Default ImageView class names
DEFAULT_LINK_METADATAVIEW_NAME - Static variable in class hdf.view.ViewProperties
DEFAULT_MODULE_TEXT - Static variable in class hdf.view.ViewProperties: Text for default selection of modules
DEFAULT_PALETTEVIEW_NAME - Static variable in class hdf.view.ViewProperties: Default PaletteView class names
DEFAULT_SCALAR_ATTRIBUTE_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties
DEFAULT_SCALAR_DATASET_TABLEVIEW_NAME - Static variable in class hdf.view.ViewProperties: Default TableView class names
DEFAULT_TREEVIEW_NAME - Static variable in class hdf.view.ViewProperties: Default TreeView class names
DefaultFileFilter - Class in hdf.view: A convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about.
DefaultFileFilter() - Constructor for class hdf.view.DefaultFileFilter: Creates a file filter.
DefaultFileFilter(String) - Constructor for class hdf.view.DefaultFileFilter: Creates a file filter that accepts files with the given extension.
DefaultFileFilter(String[]) - Constructor for class hdf.view.DefaultFileFilter: Creates a file filter from the given string array.
DefaultFileFilter(String[], String) - Constructor for class hdf.view.DefaultFileFilter: Creates a file filter from the given string array and description.
DefaultFileFilter(String, String) - Constructor for class hdf.view.DefaultFileFilter: Creates a file filter that accepts the given file type.
delete(HObject) - Method in class hdf.object.FileFormat: Deletes an object from a file.
DELIMITER_COLON - Static variable in class hdf.view.ViewProperties: name of the tab delimiter
DELIMITER_COMMA - Static variable in class hdf.view.ViewProperties: name of the tab delimiter
DELIMITER_SEMI_COLON - Static variable in class hdf.view.ViewProperties: name of the tab delimiter
DELIMITER_SPACE - Static variable in class hdf.view.ViewProperties: name of the tab delimiter
DELIMITER_TAB - Static variable in class hdf.view.ViewProperties: name of the tab delimiter
depthFirstMemberList() - Method in class hdf.object.Group
dimNames - Variable in class hdf.object.Dataset: Array of strings that represent the dimension names.
dims - Variable in class hdf.object.Dataset: The current dimension sizes of the dataset

E

enumMembers - Variable in class hdf.object.Datatype: The (name, value) pairs of enum members.
equals(HObject) - Method in class hdf.object.HObject: Returns whether this HObject is equal to the specified HObject by comparing their OIDs.
equals(Object) - Method in class hdf.object.Attribute: Returns whether this Attribute is equal to the specified HObject by comparing various properties.
equals(Object) - Method in class hdf.object.HObject
equalsOID(long[]) - Method in class hdf.object.HObject: Checks if the OID of the object is the same as the given object identifier within the same file.
exportDataset(String, String, String, int) - Method in class hdf.object.FileFormat: Export dataset.
EXTRACT - hdf.view.ViewProperties.BITMASK_OP

F

fid - Variable in class hdf.object.FileFormat: File identifier.
FILE_CREATE_DELETE - Static variable in class hdf.object.FileFormat: Flag for creating/truncating a file.
FILE_CREATE_EARLY_LIB - Static variable in class hdf.object.FileFormat: Flag to indicate if the earliest version of library is used when creating a new file.
FILE_CREATE_OPEN - Static variable in class hdf.object.FileFormat: Flag for creating/opening a file.
FILE_OBJ_SEP - Static variable in class hdf.object.FileFormat: A separator that separates file name and object name.
FILE_TYPE_BMP - Static variable in class hdf.view.Tools: Key for BMP image file type.
FILE_TYPE_GIF - Static variable in class hdf.view.Tools: Key for GIF image file type.
FILE_TYPE_HDF4 - Static variable in class hdf.object.FileFormat: Key for HDF4 file format.
FILE_TYPE_HDF5 - Static variable in class hdf.object.FileFormat: Key for HDF5 file format.
FILE_TYPE_IMAGE - Static variable in class hdf.view.Tools: Key for all image file type.
FILE_TYPE_JPEG - Static variable in class hdf.view.Tools: Key for JPEG image file type.
FILE_TYPE_NC3 - Static variable in class hdf.object.FileFormat: Key for NetCDF file format.
FILE_TYPE_PNG - Static variable in class hdf.view.Tools: Key for PNG image file type.
FILE_TYPE_TIFF - Static variable in class hdf.view.Tools: Key for TIFF image file type.
fileFormat - Variable in class hdf.object.HObject: The file which contains the object
FileFormat - Class in hdf.object: FileFormat defines general interfaces for working with files whose data is organized according to a supported format.
FileFormat(String) - Constructor for class hdf.object.FileFormat: Creates a new FileFormat instance with the given filename.
fillValue - Variable in class hdf.object.ScalarDS: The fill value of the dataset.
filters - Variable in class hdf.object.Dataset: The filters information.
findDataDist(Object, int[], double[]) - Static method in class hdf.view.Tools: Finds the distribution of data values
findMinMax(Object, double[], Object) - Static method in class hdf.view.Tools: Finds the min and max values of the data array
findObject(FileFormat, long[]) - Static method in class hdf.object.FileFormat: Finds an object by its object ID
findObject(FileFormat, String) - Static method in class hdf.object.FileFormat: Finds an object by the full path of the object (path+name)
fromNative(long) - Method in class hdf.object.Datatype: Set datatype characteristics (class, size, byte order and sign) from a given datatype identifier.
fullFileName - Variable in class hdf.object.FileFormat: The absolute pathname (path+name) of the file.

G

get(String) - Method in class hdf.object.FileFormat

Gets the HObject with the specified path from the file.

getAnimationIcon() - Static method in class hdf.view.ViewProperties

getAppsIcon() - Static method in class hdf.view.ViewProperties

getArrayDims() - Method in class hdf.object.Datatype

Returns the dimensions of an Array Datatype.

getAudioIcon() - Static method in class hdf.view.ViewProperties

getAutocontrastIcon() - Static method in class hdf.view.ViewProperties

getBinaryDataFromFile(Object, String, ByteOrder) - Static method in class hdf.view.Tools

Reads data from a binary file into a buffer.

getBlankIcon() - Static method in class hdf.view.ViewProperties

getBrightIcon() - Static method in class hdf.view.ViewProperties

getBytes(Object, double[], long, long, boolean, byte[]) - Static method in class hdf.view.Tools

Convert an array of raw data into array of a byte data.

getBytes(Object, double[], long, long, boolean, List<Number>, boolean, byte[]) - Static method in class hdf.view.Tools

getBytes(Object, double[], long, long, boolean, List<Number>, boolean, byte[], List<Integer>) - Static method in class hdf.view.Tools

Convert an array of raw data into array of a byte data.

getBytes(Object, double[], long, long, boolean, List<Number>, byte[]) - Static method in class hdf.view.Tools

getChartIcon() - Static method in class hdf.view.ViewProperties

getChunkSize() - Method in class hdf.object.Dataset

Returns the array that contains the dimension sizes of the chunk of the dataset.

getCompoundMemberNames() - Method in class hdf.object.Datatype

getCompoundMemberTypes() - Method in class hdf.object.Datatype

getCompression() - Method in interface hdf.object.DataFormat

Returns the string representation of compression information.

getCompression() - Method in class hdf.object.Dataset

Returns the string representation of compression information.

getConvertByteToString() - Method in class hdf.object.Dataset

Returns the flag that indicates if a byte array is converted to a string array.

getCopyIcon() - Static method in class hdf.view.ViewProperties

getCutIcon() - Static method in class hdf.view.ViewProperties

getData() - Method in interface hdf.object.DataFormat

Retrieves the object's data from the file.

getData() - Method in class hdf.object.Dataset

Returns the data buffer of the dataset in memory.

getDataDelimiter() - Static method in class hdf.view.ViewProperties

getDatasetIcon() - Static method in class hdf.view.ViewProperties

getDatasetIconA() - Static method in class hdf.view.ViewProperties

getDatatype() - Method in class hdf.object.Attribute

getDatatype() - Method in interface hdf.object.DataFormat

Returns the datatype of the data object.

getDatatype() - Method in class hdf.object.Dataset

getDatatypeBase() - Method in class hdf.object.Datatype

Returns the base datatype for this datatype.

getDatatypeClass() - Method in class hdf.object.Datatype

Returns the class of the datatype.

getDatatypeIcon() - Static method in class hdf.view.ViewProperties

getDatatypeIconA() - Static method in class hdf.view.ViewProperties

getDatatypeOrder() - Method in class hdf.object.Datatype

Returns the byte order of the datatype.

getDatatypeSign() - Method in class hdf.object.Datatype

Returns the sign (SIGN_NONE, SIGN_2) of an integer datatype.

getDatatypeSize() - Method in class hdf.object.Datatype

Returns the size of the datatype in bytes.

getDataView(HObject) - Method in class hdf.view.HDFView

getDescription() - Method in class hdf.object.Datatype

Returns a short text description of this datatype.

getDescription() - Method in class hdf.view.DefaultFileFilter

getDimNames() - Method in class hdf.object.Dataset

Returns the array of strings that represent the dimension names.

getDims() - Method in interface hdf.object.DataFormat

Returns the array that contains the dimension sizes of the data value of the data object.

getDims() - Method in class hdf.object.Dataset

Returns the array that contains the dimension sizes of the dataset.

getEarlyLib() - Static method in class hdf.view.ViewProperties

Returns value of default lib version for the earliest.

getEnumMembers() - Method in class hdf.object.Datatype

Returns the Map<String,String> pairs of enum members for enum datatype.

getEnumMembersAsString() - Method in class hdf.object.Datatype

Returns the HashMap pairs of enum members for enum datatype.

getExtensions() - Method in class hdf.view.DefaultFileFilter

getFID() - Method in class hdf.object.FileFormat

Returns file identifier of open file associated with this instance.

getFID() - Method in class hdf.object.HObject

Returns the file identifier of of the file containing the object.

getFile() - Method in class hdf.object.HObject

Returns the name of the file that contains this data object.

getFilecloseIcon() - Static method in class hdf.view.ViewProperties

getFileExtension() - Static method in class hdf.view.ViewProperties

getFileExtensions() - Static method in class hdf.object.FileFormat

Returns a list of file extensions for all supported file formats.

getFileFilter() - Static method in class hdf.view.DefaultFileFilter

getFileFilterBinary() - Static method in class hdf.view.DefaultFileFilter

getFileFilterBMP() - Static method in class hdf.view.DefaultFileFilter

getFileFilterGIF() - Static method in class hdf.view.DefaultFileFilter

getFileFilterHDF4() - Static method in class hdf.view.DefaultFileFilter

getFileFilterHDF5() - Static method in class hdf.view.DefaultFileFilter

getFileFilterJPEG() - Static method in class hdf.view.DefaultFileFilter

getFileFilterNetCDF3() - Static method in class hdf.view.DefaultFileFilter

getFileFilterPNG() - Static method in class hdf.view.DefaultFileFilter

getFileFilterText() - Static method in class hdf.view.DefaultFileFilter

getFileFilterTIFF() - Static method in class hdf.view.DefaultFileFilter

getFileFormat() - Method in class hdf.object.HObject

Returns the file that contains the object.

getFileFormat(String) - Static method in class hdf.object.FileFormat

Returns the FileFormat with specified key from the list of supported formats.

getFileFormatKeys() - Static method in class hdf.object.FileFormat

Returns an Enumeration of keys for all supported formats.

getFileFormats() - Static method in class hdf.object.FileFormat

Returns an array of supported FileFormat instances.

getFilenewIcon() - Static method in class hdf.view.ViewProperties

getFileopenIcon() - Static method in class hdf.view.ViewProperties

getFilePath() - Method in class hdf.object.FileFormat

Returns the absolute path for the file.

getFilesaveIcon() - Static method in class hdf.view.ViewProperties

getFillValue() - Method in class hdf.object.Attribute

getFillValue() - Method in interface hdf.object.DataFormat

Returns the fill values for the data object.

getFillValue() - Method in class hdf.object.ScalarDS

Returns the fill values for the dataset.

getFilteredImageValues() - Method in class hdf.object.ScalarDS

Get a list of values that will be filtered out in an image.

getFilters() - Method in class hdf.object.Dataset

Returns the string representation of filter information.

getFirstIcon() - Static method in class hdf.view.ViewProperties

getFoldercloseIcon() - Static method in class hdf.view.ViewProperties

getFoldercloseIconA() - Static method in class hdf.view.ViewProperties

getFolderopenIcon() - Static method in class hdf.view.ViewProperties

getFolderopenIconA() - Static method in class hdf.view.ViewProperties

getFontSize() - Static method in class hdf.view.ViewProperties

getFontType() - Static method in class hdf.view.ViewProperties

getFullName() - Method in class hdf.object.HObject

Returns the full name (group path + object name) of the object.

getH4Icon() - Static method in class hdf.view.ViewProperties

getH4IconR() - Static method in class hdf.view.ViewProperties

getH4toH5() - Static method in class hdf.view.ViewProperties

getH5Icon() - Static method in class hdf.view.ViewProperties

getH5IconR() - Static method in class hdf.view.ViewProperties

getHDF5UserBlock(String) - Static method in class hdf.view.Tools

Read HDF5 user block data into byte array.

getHdfIcon() - Static method in class hdf.view.ViewProperties

getHeight() - Method in interface hdf.object.DataFormat

Returns the dimension size of the vertical axis.

getHeight() - Method in class hdf.object.Dataset

Returns the dimension size of the vertical axis.

getHelpIcon() - Static method in class hdf.view.ViewProperties

getHelpViewList() - Static method in class hdf.view.ViewProperties

getHObject(String) - Static method in class hdf.object.FileFormat

Deprecated.

As of 2.4, replaced by FileFormat.get(String)

This static method, which as been deprecated, causes two problems:

It can be very expensive if it is called many times or in a loop because each call to the method creates an instance of a file.
Since the method does not return the instance of the file, the file cannot be closed directly and may be left open (memory leak). The only way to close the file is through the object returned by this method.

getHObject(String, String) - Static method in class hdf.object.FileFormat

Deprecated.

As of 2.4, replaced by FileFormat.get(String)

This static method, which as been deprecated, causes two problems:

It can be very expensive if it is called many times or in a loop because each call to the method creates an instance of a file.
Since the method does not return the instance of the file, the file cannot be closed directly and may be left open (memory leak). The only way to close the file is through the object returned by this method, for example:
```
 Dataset dset = H5File.getObject("hdf5_test.h5", "/images/iceburg");
 ...
 // close the file through dset
 dset.getFileFormat().close();
 
```

getImageDataRange() - Method in class hdf.object.ScalarDS

Returns the (min, max) pair of image data range.

getImageFileFilter() - Static method in class hdf.view.DefaultFileFilter

getImageIcon() - Static method in class hdf.view.ViewProperties

getImageIconA() - Static method in class hdf.view.ViewProperties

getImageOrigin() - Static method in class hdf.view.ViewProperties

getImageViewList() - Static method in class hdf.view.ViewProperties

getIndexOrder() - Static method in class hdf.view.ViewProperties

getIndexOrder(String) - Method in class hdf.object.FileFormat

getIndexOrderValue(String) - Static method in class hdf.object.FileFormat

getIndexType() - Static method in class hdf.view.ViewProperties

getIndexType(String) - Method in class hdf.object.FileFormat

getIndexTypeValue(String) - Static method in class hdf.object.FileFormat

getInstance(String) - Static method in class hdf.object.FileFormat

Creates a FileFormat instance for the specified file.

getInterlace() - Method in class hdf.object.ScalarDS

Returns the interlace mode of a true color image (RGB).

getJavaObjectRuntimeClass(Object) - Static method in class hdf.object.Utils

Retrieves the Java Runtime Class of the given Object.

getLargeHdfIcon() - Static method in class hdf.view.ViewProperties

getLastIcon() - Static method in class hdf.view.ViewProperties

getLateLib() - Static method in class hdf.view.ViewProperties

Returns value of default lib version for the latest.

getLibBounds() - Method in class hdf.object.FileFormat

Gets the bounds of library versions

getLibBoundsDescription() - Method in class hdf.object.FileFormat

getLibversion() - Method in class hdf.object.FileFormat

Returns the version of the library for the implementing FileFormat class.

getLinkIcon() - Static method in class hdf.view.ViewProperties

getLinkTargetObjName() - Method in class hdf.object.HObject

Returns the name of the target object that is linked to.

getListOfImageViews() - Static method in class hdf.view.HDFView

getListOfMetaDataViews() - Static method in class hdf.view.HDFView

getListOfPaletteViews() - Static method in class hdf.view.HDFView

getListOfTableViews() - Static method in class hdf.view.HDFView

getListOfTreeViews() - Static method in class hdf.view.HDFView

getMaxDims() - Method in class hdf.object.Dataset

Returns the array that contains the max dimension sizes of the dataset.

getMaxMembers() - Method in class hdf.object.FileFormat

Returns the maximum number of objects that can be loaded into memory.

getMaxMembers() - Static method in class hdf.view.ViewProperties

Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.

getMaxRecentFiles() - Static method in class hdf.view.ViewProperties

getMember(int) - Method in class hdf.object.Group

Get the HObject at the specified index in this Group's member list.

getMemberCount() - Method in class hdf.object.Attribute

Returns the number of members of the compound attribute.

getMemberCount() - Method in interface hdf.object.CompoundDataFormat

Returns the number of members of the compound data object.

getMemberCount() - Method in class hdf.object.CompoundDS

Returns the number of members of the compound dataset.

getMemberDims(int) - Method in class hdf.object.Attribute

Returns the dimension sizes of the i-th member.

getMemberDims(int) - Method in interface hdf.object.CompoundDataFormat

Returns the dimension sizes of the i-th member.

getMemberDims(int) - Method in class hdf.object.CompoundDS

Returns the dimension sizes of the i-th member.

getMemberList() - Method in class hdf.object.Group

Returns the list of members of this group.

getMemberNames() - Method in class hdf.object.Attribute

Returns the names of the members of the compound attribute.

getMemberNames() - Method in interface hdf.object.CompoundDataFormat

Returns the names of the members of the compound data object.

getMemberNames() - Method in class hdf.object.CompoundDS

Returns the names of the members of the compound dataset.

getMemberOrders() - Method in class hdf.object.Attribute

Returns array containing the total number of elements of the members of the compound attribute.

getMemberOrders() - Method in interface hdf.object.CompoundDataFormat

Returns array containing the total number of elements of the members of the compound data object.

getMemberOrders() - Method in class hdf.object.CompoundDS

Returns array containing the total number of elements of the members of the compound dataset.

getMemberTypes() - Method in class hdf.object.Attribute

Returns an array of datatype objects of compound members.

getMemberTypes() - Method in interface hdf.object.CompoundDataFormat

Returns an array of datatype objects of the compound members.

getMemberTypes() - Method in class hdf.object.CompoundDS

Returns an array of datatype objects of compound members.

getMetadata() - Method in class hdf.object.Attribute

getMetadata() - Method in class hdf.object.Datatype

getMetadata() - Method in interface hdf.object.MetaDataContainer

Retrieves the object's metadata, such as attributes, from the file.

getMetaDataViewList() - Static method in class hdf.view.ViewProperties

getMRF() - Static method in class hdf.view.ViewProperties

getName() - Method in class hdf.object.HObject

Returns the name of the object.

getNC3Icon() - Static method in class hdf.view.ViewProperties

getNC3IconR() - Static method in class hdf.view.ViewProperties

getNextIcon() - Static method in class hdf.view.ViewProperties

getNumberOfMembers() - Method in class hdf.object.FileFormat

Returns the number of objects in memory.

getNumberOfMembersInFile() - Method in class hdf.object.Group

Returns the total number of members of this group in file.

getOID() - Method in class hdf.object.HObject

Returns a cloned copy of the object identifier.

getOriginalClass() - Method in interface hdf.object.DataFormat

Get runtime Class of the original data buffer if converted.

getOriginalClass() - Method in class hdf.object.Dataset

Get Class of the original data buffer if converted.

getPalette() - Method in class hdf.object.ScalarDS

Returns the palette of this scalar dataset or null if palette does not exist.

getPaletteIcon() - Static method in class hdf.view.ViewProperties

getPaletteList() - Static method in class hdf.view.ViewProperties

getPaletteName(int) - Method in class hdf.object.ScalarDS

Get the name of a specific image palette from file.

getPaletteRefs() - Method in class hdf.object.ScalarDS

Returns the byte array of palette refs.

getPaletteViewList() - Static method in class hdf.view.ViewProperties

getParent() - Method in class hdf.object.Group

getParentObject() - Method in class hdf.object.Attribute

Returns the HObject to which this Attribute is currently "attached".

getPasteIcon() - Static method in class hdf.view.ViewProperties

getPath() - Method in class hdf.object.HObject

Returns the group path of the object.

getPdfIcon() - Static method in class hdf.view.ViewProperties

getPreviousIcon() - Static method in class hdf.view.ViewProperties

getProperty(String) - Method in class hdf.object.Attribute

get a property for a given key.

getPropertyFile() - Static method in class hdf.view.ViewProperties

getPropertyKeys() - Method in class hdf.object.Attribute

get all property keys.

getQuestionIcon() - Static method in class hdf.view.ViewProperties

getRank() - Method in interface hdf.object.DataFormat

Returns the rank (number of dimensions) of the data object.

getRank() - Method in class hdf.object.Dataset

Returns the rank (number of dimensions) of the dataset.

getRootObject() - Method in class hdf.object.FileFormat

Returns the root object for the file associated with this instance.

getSelectedDims() - Method in interface hdf.object.DataFormat

Returns the dimension sizes of the selected subset.

getSelectedDims() - Method in class hdf.object.Dataset

Returns the dimension sizes of the selected subset.

getSelectedIndex() - Method in interface hdf.object.DataFormat

Returns the indices of display order.

getSelectedIndex() - Method in class hdf.object.Dataset

Returns the indices of display order.

getSelectedMemberCount() - Method in class hdf.object.Attribute

Returns the number of selected members of the compound attribute.

getSelectedMemberCount() - Method in interface hdf.object.CompoundDataFormat

Returns the number of selected members of the compound data object.

getSelectedMemberCount() - Method in class hdf.object.CompoundDS

Returns the number of selected members of the compound dataset.

getSelectedMemberNames() - Method in class hdf.object.Attribute

Returns an array of the names of the selected members of the compound dataset.

getSelectedMemberNames() - Method in interface hdf.object.CompoundDataFormat

Returns an array of the names of the selected compound members.

getSelectedMemberNames() - Method in class hdf.object.CompoundDS

Returns an array of the names of the selected members of the compound dataset.

getSelectedMemberOrders() - Method in class hdf.object.Attribute

Returns array containing the total number of elements of the selected members of the compound attribute.

getSelectedMemberOrders() - Method in interface hdf.object.CompoundDataFormat

Returns array containing the total number of elements of the selected members of the compound data object.

getSelectedMemberOrders() - Method in class hdf.object.CompoundDS

Returns array containing the total number of elements of the selected members of the compound dataset.

getSelectedMemberTypes() - Method in class hdf.object.Attribute

Returns an array of datatype objects of selected compound members.

getSelectedMemberTypes() - Method in interface hdf.object.CompoundDataFormat

Returns an array of datatype objects of the selected compound members.

getSelectedMemberTypes() - Method in class hdf.object.CompoundDS

Returns an array of datatype objects of selected compound members.

getSize(long) - Method in class hdf.object.Dataset

Returns the size in bytes of a given datatype.

getSrbAccount() - Static method in class hdf.view.ViewProperties

getStartDims() - Method in interface hdf.object.DataFormat

Returns the starting position of a selected subset.

getStartDims() - Method in class hdf.object.Dataset

Returns the starting position of a selected subset.

getStartMembers() - Method in class hdf.object.FileFormat

Returns the index of the starting object to be loaded into memory.

getStartMembers() - Static method in class hdf.view.ViewProperties

Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.

getStorage() - Method in class hdf.object.Dataset

Returns the string representation of storage information.

getStorageLayout() - Method in class hdf.object.Dataset

Returns the string representation of storage layout information.

getStride() - Method in interface hdf.object.DataFormat

Returns the selectedStride of the selected dataset.

getStride() - Method in class hdf.object.Dataset

Returns the selectedStride of the selected dataset.

getTableIcon() - Static method in class hdf.view.ViewProperties

getTableIconA() - Static method in class hdf.view.ViewProperties

getTableViewList() - Static method in class hdf.view.ViewProperties

getTestState() - Method in class hdf.view.HDFView

getTextIcon() - Static method in class hdf.view.ViewProperties

getTextIconA() - Static method in class hdf.view.ViewProperties

getTreeView() - Method in class hdf.view.HDFView

getTreeViewList() - Static method in class hdf.view.ViewProperties

getUrlBar() - Method in class hdf.view.HDFView

getUrlIcon() - Static method in class hdf.view.ViewProperties

getUsersGuide() - Static method in class hdf.view.ViewProperties

getVideoIcon() - Static method in class hdf.view.ViewProperties

getViewRoot() - Static method in class hdf.view.ViewProperties

getVirtualFilename(int) - Method in class hdf.object.Dataset

getVirtualMaps() - Method in class hdf.object.Dataset

getWidth() - Method in interface hdf.object.DataFormat

Returns the dimension size of the horizontal axis.

getWidth() - Method in class hdf.object.Dataset

Returns the dimension size of the horizontal axis.

getWorkDir() - Static method in class hdf.view.ViewProperties

getXlsIcon() - Static method in class hdf.view.ViewProperties

getZoominIcon() - Static method in class hdf.view.ViewProperties

getZoomoutIcon() - Static method in class hdf.view.ViewProperties

Group - Class in hdf.object

Group is an abstract class.

Group(FileFormat, String, String, Group) - Constructor for class hdf.object.Group

Constructs an instance of the group with specific name, path and parent group.

Group(FileFormat, String, String, Group, long[]) - Constructor for class hdf.object.Group

Deprecated.

Not for public use in the future.
Using Group(FileFormat, String, String, Group)

H

hasAlpha(Image) - Static method in class hdf.view.Tools: This method returns true if the specified image has transparent pixels.
hasAttribute() - Method in class hdf.object.Attribute
hasAttribute() - Method in interface hdf.object.MetaDataContainer: Check if the object has any attributes attached.
hashCode() - Method in class hdf.object.Attribute
hashCode() - Method in class hdf.object.HObject
hdf.object - package hdf.object
hdf.view - package hdf.view
HDFView - Class in hdf.view: HDFView is the main class of this HDF visual tool.
HDFView(String) - Constructor for class hdf.view.HDFView: Constructs HDFView with a given root directory, where the HDFView is installed, and opens the given files in the viewer.
HEXCHARS - Static variable in class hdf.view.Tools
HISTOGRAM - Static variable in class hdf.view.Chart: histogram style chart
HObject - Class in hdf.object: The HObject class is the root class of all the HDF data objects.
HObject() - Constructor for class hdf.object.HObject: Constructs an instance of a data object without name and path.
HObject(FileFormat, String, String) - Constructor for class hdf.object.HObject: Constructs an instance of a data object with specific name and path.
HObject(FileFormat, String, String, long[]) - Constructor for class hdf.object.HObject: Deprecated.

I

IMAGE - hdf.view.ViewProperties.DataViewType
imageDataRange - Variable in class hdf.object.ScalarDS: The min-max range of image data values.
INDEXBASE1 - hdf.view.ViewProperties.DATA_VIEW_KEY
INFO - hdf.view.ViewProperties.DATA_VIEW_KEY
init() - Method in class hdf.object.Attribute
init() - Method in interface hdf.object.DataFormat
inited - Variable in class hdf.object.Dataset: Flag to indicate if this dataset has been initialized
interlace - Variable in class hdf.object.ScalarDS: The interlace mode of the stored raster image data.
INTERLACE_LINE - Static variable in class hdf.object.ScalarDS: Indicates that each pixel component of RGB is stored as a scan line.
INTERLACE_PIXEL - Static variable in class hdf.object.ScalarDS: Indicates that the pixel RGB values are contiguous.
INTERLACE_PLANE - Static variable in class hdf.object.ScalarDS: Indicates that each pixel component of RGB is stored as a plane.
isArray() - Method in class hdf.object.Datatype: Checks if this datatype is an array type.
isAutoContrast() - Static method in class hdf.view.ViewProperties: Returns true if auto contrast is used in image processing.
isBitField() - Method in class hdf.object.Datatype: Checks if this datatype is a bitfield type.
isChar() - Method in class hdf.object.Datatype: Checks if this datatype is a character type.
isCompound() - Method in class hdf.object.Datatype: Checks if this datatype is an compound type.
isConvertEnum() - Static method in class hdf.view.ViewProperties
isDataLoaded - Variable in class hdf.object.Dataset: Flag to indicate if data values are loaded into memory.
isDefaultImageOrder - Variable in class hdf.object.ScalarDS: Flag to indicate if the dataset is displayed as an image with default order of dimensions.
isDefaultImageOrder() - Method in class hdf.object.ScalarDS: Returns true if this dataset is displayed as an image with default image order.
isEnum() - Method in class hdf.object.Datatype: Checks if this datatype is a enum type.
isExtensionListInDescription() - Method in class hdf.view.DefaultFileFilter
isFillValueConverted - Variable in class hdf.object.ScalarDS: Flag to indicate if the FillValue is converted from unsigned C.
isFloat() - Method in class hdf.object.Datatype: Checks if this datatype is a floating-point type.
isHDF4(String) - Static method in class hdf.view.Tools: look at the first 4 bytes of the file to see if it is an HDF4 file.
isHDF5(String) - Static method in class hdf.view.Tools: look at the first 8 bytes of the file to see if it is an HDF5 file.
isImage - Variable in class hdf.object.ScalarDS: True if this dataset is an image.
isImage() - Method in class hdf.object.ScalarDS: Returns true if this dataset is an image.
isImageDisplay - Variable in class hdf.object.ScalarDS: Flag to indicate if the dataset is displayed as an image.
isImageDisplay() - Method in class hdf.object.ScalarDS: Returns true if this dataset is displayed as an image.
isIndexBase1() - Static method in class hdf.view.ViewProperties
isInited() - Method in interface hdf.object.DataFormat
isInited() - Method in class hdf.object.Dataset
isInteger() - Method in class hdf.object.Datatype: Checks if this datatype is an integer type.
isMemberSelected - Variable in class hdf.object.Attribute: The array to store flags to indicate if a member of this compound attribute is selected for read/write.
isMemberSelected - Variable in class hdf.object.CompoundDS: The array to store flags to indicate if a member of this compound dataset is selected for read/write.
isMemberSelected(int) - Method in class hdf.object.Attribute: Checks if a member of the compound attribute is selected for read/write.
isMemberSelected(int) - Method in interface hdf.object.CompoundDataFormat: Checks if a member of the compound data object is selected for read/write.
isMemberSelected(int) - Method in class hdf.object.CompoundDS: Checks if a member of the compound dataset is selected for read/write.
isNaNINF(double) - Static method in class hdf.view.Tools: Check if a given number if NaN or INF.
isNetcdf(String) - Static method in class hdf.view.Tools: look at the first 4 bytes of the file to see if it is a netCDF file byte[0]=67, byte[1]=68, byte[2]=70, byte[3]=1 or
isOpaque() - Method in class hdf.object.Datatype: Checks if this datatype is a opaque type.
isReadOnly - Variable in class hdf.object.FileFormat: Flag indicating if the file access is read-only.
isReadOnly() - Method in class hdf.object.FileFormat: Returns true if the file access is read-only.
isReadOnly() - Static method in class hdf.view.ViewProperties: Returns true if default file access is read only.
isRef() - Method in class hdf.object.Datatype: Checks if this datatype is a reference type.
isRoot() - Method in class hdf.object.Group: Checks if it is a root group.
isScalar - Variable in class hdf.object.Attribute: Flag to indicate if the attribute data is a single scalar point
isScalar() - Method in class hdf.object.Attribute
isString() - Method in class hdf.object.Datatype: Checks if this datatype is a string type.
isString(long) - Method in class hdf.object.Dataset: Checks if a given datatype is a string.
isText - Variable in class hdf.object.ScalarDS: True if this dataset is ASCII text.
isText() - Method in class hdf.object.Datatype
isThisType(FileFormat) - Method in class hdf.object.FileFormat: Checks if the class implements the specified FileFormat.
isThisType(String) - Method in class hdf.object.FileFormat: Checks if the implementing FileFormat class matches the format of the specified file.
isTrueColor - Variable in class hdf.object.ScalarDS: True if this dataset is a true color image.
isTrueColor() - Method in class hdf.object.ScalarDS
isUnsigned() - Method in class hdf.object.Datatype: Checks if this datatype is unsigned.
isVariableStr - Variable in class hdf.object.Datatype
isVarStr() - Method in class hdf.object.Datatype: Checks if this datatype is a variable-length string type.
isVirtual() - Method in class hdf.object.Dataset
isVLEN - Variable in class hdf.object.Datatype: Determines whether this datatype is a variable-length type.
isVLEN() - Method in class hdf.object.Datatype: Checks if this datatype is a variable-length type.

L

launchBrowser(String) - Static method in class hdf.view.Tools: Launch default browser for a given URL.
LINE_COLORS - Static variable in class hdf.view.Chart: The default colors of lines for selected columns
LINEPLOT - Static variable in class hdf.view.Chart: line style chart
LINK_TYPE_EXTERNAL - Static variable in class hdf.object.Group
LINK_TYPE_HARD - Static variable in class hdf.object.Group
LINK_TYPE_SOFT - Static variable in class hdf.object.Group
linkTargetObjName - Variable in class hdf.object.HObject: The name of the Target Object that is being linked to.
load() - Method in class hdf.view.ViewProperties: Load user properties from property file
loadExtClass() - Static method in class hdf.view.ViewProperties: load module classes
loadIcons() - Static method in class hdf.view.ViewProperties

M

main(String[]) - Static method in class hdf.view.HDFView: The starting point of this application.
MAX_INT16 - Static variable in class hdf.view.Tools
MAX_INT32 - Static variable in class hdf.view.Tools
MAX_INT64 - Static variable in class hdf.view.Tools
MAX_INT8 - Static variable in class hdf.view.Tools
MAX_RECENT_FILES - Static variable in class hdf.view.ViewProperties: the maximum number of most recent files
MAX_UINT16 - Static variable in class hdf.view.Tools
MAX_UINT32 - Static variable in class hdf.view.Tools
MAX_UINT64 - Static variable in class hdf.view.Tools
MAX_UINT8 - Static variable in class hdf.view.Tools
maxDims - Variable in class hdf.object.Dataset: The max dimension sizes of the dataset
memberDims - Variable in class hdf.object.Attribute: The dimension sizes of each member.
memberDims - Variable in class hdf.object.CompoundDS: The dimension sizes of each member.
memberNames - Variable in class hdf.object.Attribute: The names of the members of the compound attribute.
memberNames - Variable in class hdf.object.CompoundDS: The names of members of the compound dataset.
memberOrders - Variable in class hdf.object.Attribute: Array containing the total number of elements of the members of this compound attribute.
memberOrders - Variable in class hdf.object.CompoundDS: Returns array containing the total number of elements of the members of this compound dataset.
memberTypes - Variable in class hdf.object.Attribute: The datatypes of the compound attribute's members.
memberTypes - Variable in class hdf.object.CompoundDS: The datatypes of compound members.
METADATA - hdf.view.ViewProperties.DataViewType
MetaDataContainer - Interface in hdf.object: An interface that provides general I/O operations for object metadata attached to an object.

N

NATIVE - Static variable in class hdf.object.Datatype: The default definition for datatype size, order, and sign.
newInstance(Class<?>, Object[]) - Static method in class hdf.view.Tools: Create and initialize a new instance of the given class.
nMembersInFile - Variable in class hdf.object.Group: Total number of members of this group in file.
nPoints - Variable in class hdf.object.Dataset: The number of data points in the memory buffer.
NSGN - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
numberOfMembers - Variable in class hdf.object.Attribute: The number of members of the compound attribute.
numberOfMembers - Variable in class hdf.object.CompoundDS: The number of members of the compound dataset.
numberOfPoints - Variable in class hdf.view.Chart: number of data points

O

OBJECT - hdf.view.ViewProperties.DATA_VIEW_KEY
oid - Variable in class hdf.object.HObject: Array of long integer storing unique identifier for the object.
open() - Method in class hdf.object.Attribute
open() - Method in class hdf.object.Datatype: Opens access to this named datatype.
open() - Method in class hdf.object.FileFormat: Opens file and returns a file identifier.
open() - Method in class hdf.object.HObject: Opens an existing object such as a dataset or group for access.
open() - Method in class hdf.view.Chart
open(int...) - Method in class hdf.object.FileFormat: Opens file and returns a file identifier.
open(String, int) - Method in class hdf.object.FileFormat: Deprecated.
As of 2.4, replaced by FileFormat.createInstance(String, int) The replacement method has identical functionality and a more descriptive name. Since open is used elsewhere to perform a different function this method has been deprecated.
OPEN_NEW - Static variable in class hdf.object.FileFormat: File first time access flag for open file.
openMainWindow(List<File>, int, int, int, int) - Method in class hdf.view.HDFView: Creates HDFView with a given size, and opens the given files in the viewer.
ORDER_BE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
ORDER_LE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
ORDER_NONE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
ORDER_VAX - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
ORIGIN_LL - Static variable in class hdf.view.ViewProperties: image origin: LowerLeft
ORIGIN_LR - Static variable in class hdf.view.ViewProperties: image origin: LowerRight
ORIGIN_UL - Static variable in class hdf.view.ViewProperties: image origin: UpperLeft
ORIGIN_UR - Static variable in class hdf.view.ViewProperties: image origin: UpperRight
originalBuf - Variable in class hdf.object.Dataset: The data buffer that contains the raw data directly reading from file (before any data conversion).

P

palette - Variable in class hdf.object.ScalarDS: The indexed RGB color model with 256 colors.
PALETTE - hdf.view.ViewProperties.DataViewType
parent - Variable in class hdf.object.Group: The parent group where this group is located.
parentObject - Variable in class hdf.object.Attribute: The HObject to which this Attribute is attached

R

rank - Variable in class hdf.object.Dataset: The number of dimensions of the dataset.
read() - Method in class hdf.object.Attribute
read() - Method in interface hdf.object.DataFormat: Reads the data from file.
READ - Static variable in class hdf.object.FileFormat: File access flag for read-only permission.
readBytes() - Method in class hdf.object.Attribute
readBytes() - Method in class hdf.object.Dataset: Reads the raw data of the dataset from file to a byte array.
READONLY - hdf.view.ViewProperties.DATA_VIEW_KEY
readPalette(int) - Method in class hdf.object.ScalarDS: Reads a specific image palette from file.
readPalette(String) - Static method in class hdf.view.Tools: read an image palette from a file.
removeDataView(DataView) - Method in class hdf.view.HDFView
removeFileFormat(String) - Static method in class hdf.object.FileFormat: Removes a FileFormat from the list of supported formats.
removeFromMemberList(HObject) - Method in class hdf.object.Group: Removes an object from the member list of this group in memory.
removeMetadata(Object) - Method in class hdf.object.Attribute
removeMetadata(Object) - Method in class hdf.object.Datatype
removeMetadata(Object) - Method in interface hdf.object.MetaDataContainer: Deletes an existing piece of metadata from this object.
renameAttribute(HObject, String, String) - Method in class hdf.object.FileFormat: Renames an attribute.
runMainWindow() - Method in class hdf.view.HDFView

S

save() - Method in class hdf.view.ViewProperties: Save user properties into property file
saveAsBinary(DataOutputStream, Object, ByteOrder) - Static method in class hdf.view.Tools
saveImageAs(BufferedImage, File, String) - Static method in class hdf.view.Tools: Save a BufferedImage into an image file.
ScalarDS - Class in hdf.object: A scalar dataset is a multiple dimension array of scalar points.
ScalarDS(FileFormat, String, String) - Constructor for class hdf.object.ScalarDS: Constructs an instance of a ScalarDS with specific name and path.
ScalarDS(FileFormat, String, String, long[]) - Constructor for class hdf.object.ScalarDS: Deprecated.
Not for public use in the future.
Using ScalarDS(FileFormat, String, String)
selectedDims - Variable in class hdf.object.Dataset: Array that contains the number of data points selected (for read/write) in each dimension.
selectedIndex - Variable in class hdf.object.Dataset: Array that contains the indices of the dimensions selected for display.
selectedStride - Variable in class hdf.object.Dataset: The number of elements to move from the start location in each dimension.
selectMember(int) - Method in class hdf.object.Attribute: Selects the i-th member for read/write.
selectMember(int) - Method in interface hdf.object.CompoundDataFormat: Selects the i-th member for read/write.
selectMember(int) - Method in class hdf.object.CompoundDS: Selects the i-th member for read/write.
SEPARATOR - Static variable in class hdf.object.CompoundDS: A single character to separate the names of nested compound fields.
SEPARATOR - Static variable in class hdf.object.HObject: The separator of object path, i.e.
setAllMemberSelection(boolean) - Method in class hdf.object.Attribute: Selects/deselects all members.
setAllMemberSelection(boolean) - Method in interface hdf.object.CompoundDataFormat: Selects/deselects all members.
setAllMemberSelection(boolean) - Method in class hdf.object.CompoundDS: Selects/deselects all members.
setAutoContrast(boolean) - Static method in class hdf.view.ViewProperties: Set the flag to indicate if auto contrast is used in image process.
setConvertByteToString(boolean) - Method in class hdf.object.Dataset: Sets the flag that indicates if a byte array is converted to a string array.
setConvertEnum(boolean) - Static method in class hdf.view.ViewProperties
setData(Object) - Method in interface hdf.object.DataFormat
setData(Object) - Method in class hdf.object.Dataset: Not for public use in the future.
setDataDelimiter(String) - Static method in class hdf.view.ViewProperties: set the delimiter of data values
setDescription(String) - Method in class hdf.view.DefaultFileFilter: Sets the human readable description of this filter.
setEarlyLib(String) - Static method in class hdf.view.ViewProperties: Set the value of default lib version for the earliest.
setEnumMembers(String) - Method in class hdf.object.Datatype: Sets the (key, value) pairs of enum members for enum datatype.
setExtensionListInDescription(boolean) - Method in class hdf.view.DefaultFileFilter: Determines whether the extension list (.jpg, .gif, etc) should show up in the human readable description.
setFileExtension(String) - Static method in class hdf.view.ViewProperties: set the file extension
setFontSize(int) - Static method in class hdf.view.ViewProperties: sets the font size
setFontType(String) - Static method in class hdf.view.ViewProperties: sets the font type
setH4toH5(String) - Static method in class hdf.view.ViewProperties: set the path of the H4 to H5 converter
setHDF5UserBlock(String, String, byte[]) - Static method in class hdf.view.Tools: Write HDF5 user block data into byte array.
setImageDataRange(double, double) - Method in class hdf.object.ScalarDS: Sets data range for an image.
setImageOrigin(String) - Static method in class hdf.view.ViewProperties: set the image origin
setIndexBase1(boolean) - Static method in class hdf.view.ViewProperties: Set the flag to indicate if IndexBase should start at 1.
setIndexOrder(int) - Method in class hdf.object.FileFormat
setIndexOrder(String) - Static method in class hdf.view.ViewProperties: set the index order
setIndexType(int) - Method in class hdf.object.FileFormat
setIndexType(String) - Static method in class hdf.view.ViewProperties: set the index type
setIsImage(boolean) - Method in class hdf.object.ScalarDS: Sets the flag to indicate this dataset is an image.
setIsImageDisplay(boolean) - Method in class hdf.object.ScalarDS: Sets the flag to display the dataset as an image.
setLateLib(String) - Static method in class hdf.view.ViewProperties: Set the value of default lib version for the latest.
setLibBounds(String, String) - Method in class hdf.object.FileFormat: Sets the bounds of library versions.
setLineColors(int[]) - Method in class hdf.view.Chart: Sets the color of each line of a line plot
setLineLabels(String[]) - Method in class hdf.view.Chart: Sets the labels of each line.
setLinkTargetObjName(String) - Method in class hdf.object.HObject: Sets the name of the target object that is linked to.
setMaxMembers(int) - Method in class hdf.object.FileFormat: Sets the maximum number of objects to be loaded into memory.
setMaxMembers(int) - Static method in class hdf.view.ViewProperties: Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
setName(String) - Method in class hdf.object.Group: Sets the name of the group.
setName(String) - Method in class hdf.object.HObject: Sets the name of the object.
setNewLibBounds(String, String) - Method in class hdf.object.FileFormat: Sets the bounds of new library versions.
setPalette(byte[][]) - Method in class hdf.object.ScalarDS: Sets the palette for this dataset.
setParentObject(HObject) - Method in class hdf.object.Attribute: Sets the HObject to which this Attribute is "attached".
setPath(String) - Method in class hdf.object.HObject: Sets the path of the object.
setProperty(String, Object) - Method in class hdf.object.Attribute: set a property for the attribute.
setReadOnly(boolean) - Static method in class hdf.view.ViewProperties: Set the flag to indicate if default file access is read only.
setRecentFiles(ArrayList<String>) - Static method in class hdf.view.ViewProperties: Sets the list of most recently accessed files.
setRootDir(String) - Static method in class hdf.view.ViewProperties: set the path of the default root directory
setShowImageValue(boolean) - Static method in class hdf.view.ViewProperties: Set the flag to indicate if "show image values" is set.
setShowRegRefValue(boolean) - Static method in class hdf.view.ViewProperties: Set the flag to indicate if "show RegRef values" is set.
setStartMembers(int) - Method in class hdf.object.FileFormat: Sets the starting index of objects to be loaded into memory.
setStartMembers(int) - Static method in class hdf.view.ViewProperties: Current Java applications such as HDFView cannot handle files with large number of objects such as 1,000,000 objects.
setTestState(boolean) - Method in class hdf.view.HDFView: Set the testing state that determines if HDFView is being executed for GUI testing.
setTypeToInteger() - Method in class hdf.view.Chart: Sets the data type of the plot data to be integer.
setUsersGuide(String) - Static method in class hdf.view.ViewProperties: set the path of H5View User's guide
setWorkDir(String) - Static method in class hdf.view.ViewProperties: set the path of the default work directory
showConfirm(Shell, String, String) - Static method in class hdf.view.Tools: Show an SWT Confirm dialog with the given message.
showError(String) - Method in class hdf.view.HDFView: Display error message
showError(Shell, String, String) - Static method in class hdf.view.Tools: Show an SWT error dialog with the given error message.
showImageValues() - Static method in class hdf.view.ViewProperties: Returns true if "show image values" is set.
showInformation(Shell, String, String) - Static method in class hdf.view.Tools: Show an SWT Information dialog with the given message.
showMetaData(HObject) - Method in class hdf.view.HDFView
showRegRefValues() - Static method in class hdf.view.ViewProperties: Returns true if "show regref values" is set.
showStatus(String) - Method in class hdf.view.HDFView: Display feedback message.
showWarning(Shell, String, String) - Static method in class hdf.view.Tools: Show an SWT Warning dialog with the given message.
SIGN_2 - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
SIGN_NONE - Static variable in class hdf.object.Datatype: See HDF5 User's Guide
startDims - Variable in class hdf.object.Dataset: The starting position of each dimension of a selected subset.
storage - Variable in class hdf.object.Dataset: The storage information.
storageLayout - Variable in class hdf.object.Dataset: The storage layout information.
stringToByte(String[], int) - Static method in class hdf.object.Dataset: Converts a string array into an array of bytes for a fixed string dataset.

T

TABLE - hdf.view.ViewProperties.DataViewType
toBinaryString(long, int) - Static method in class hdf.view.Tools: Returns a string representation of the long argument as an unsigned integer in base 2.
toBinaryString(BigInteger, int) - Static method in class hdf.view.Tools
toBufferedImage(Image) - Static method in class hdf.view.Tools: This method returns a buffered image with the contents of an image.
toHexString(long, int) - Static method in class hdf.view.Tools: Returns a string representation of the long argument as an unsigned integer in base 16.
toHexString(BigInteger, int) - Static method in class hdf.view.Tools: Returns a string representation of the BigInteger argument as an unsigned integer in base 16.
Tools - Class in hdf.view: The "Tools" class contains various tools for HDF files such as jpeg to HDF converter.
Tools() - Constructor for class hdf.view.Tools
toString() - Method in class hdf.object.Datatype
toString() - Method in class hdf.object.HObject: Returns the name of the object.
toString(String) - Method in class hdf.object.Attribute: Returns a string representation of the data value of the attribute.
toString(String, int) - Method in class hdf.object.Attribute: Returns a string representation of the data value of the attribute.
TRANSPOSED - hdf.view.ViewProperties.DATA_VIEW_KEY
TREEVIEW - hdf.view.ViewProperties.DataViewType

U

unsignedConverted - Variable in class hdf.object.Attribute: Flag to indicate is the original unsigned C data is converted.
unsignedConverted - Variable in class hdf.object.ScalarDS: Flag to indicate is the original unsigned C data is converted.
updateMetadata(Object) - Method in class hdf.object.Attribute
updateMetadata(Object) - Method in class hdf.object.Datatype
updateMetadata(Object) - Method in interface hdf.object.MetaDataContainer: Updates an existing piece of metadata attached to this object.
Utils - Class in hdf.object

V

valueOf(String) - Static method in enum hdf.view.ViewProperties.BITMASK_OP: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum hdf.view.ViewProperties.DATA_VIEW_KEY: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum hdf.view.ViewProperties.DataViewType: Returns the enum constant of this type with the specified name.
values() - Static method in enum hdf.view.ViewProperties.BITMASK_OP: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum hdf.view.ViewProperties.DATA_VIEW_KEY: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum hdf.view.ViewProperties.DataViewType: Returns an array containing the constants of this enum type, in the order they are declared.
VERSION - Static variable in class hdf.view.ViewProperties: the version of the HDFViewer
VIEW_NAME - hdf.view.ViewProperties.DATA_VIEW_KEY
ViewProperties - Class in hdf.view
ViewProperties(String) - Constructor for class hdf.view.ViewProperties: Creates a property list with given root directory of the HDFView.
ViewProperties.BITMASK_OP - Enum in hdf.view: Property keys control how the data is displayed.
ViewProperties.DATA_VIEW_KEY - Enum in hdf.view: Property keys control how the data is displayed.
ViewProperties.DataViewType - Enum in hdf.view: Used to create different DataViews for a given HObject.

W

write() - Method in interface hdf.object.DataFormat: Writes the current memory buffer to the object in the file.
write() - Method in class hdf.object.Dataset: Writes the memory buffer of this dataset to file.
write(Object) - Method in class hdf.object.Attribute
write(Object) - Method in interface hdf.object.DataFormat: Writes a memory buffer to the object in the file.
WRITE - Static variable in class hdf.object.FileFormat: File access flag for read/write permission.
writeAttribute(HObject, Attribute, boolean) - Method in class hdf.object.FileFormat: Attaches a given attribute to an object.
writeDataToFile(FileFormat) - Method in class hdf.view.HDFView: Write the change of data to the given file.
writeMetadata(Object) - Method in class hdf.object.Attribute
writeMetadata(Object) - Method in class hdf.object.Datatype
writeMetadata(Object) - Method in interface hdf.object.MetaDataContainer: Writes a specific piece of metadata (such as an attribute) into the file.

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