Detailed Description

This class is the Java interface for the HDF5 library.

This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps a single HDF5 entry point, generally with the arguments and return codes analogous to the C interface.

See also: H5, C-API; HDF5 Library and Programming Model, User Guide

Functions
static void	loadH5Lib ()

static final int	getOpenIDCount ()

static final Collection< Long >	getOpenIDs ()

static synchronized native int	H5check_version (int majnum, int minnum, int relnum)

static synchronized native int	H5close () throws HDF5LibraryException

static synchronized native int	H5open () throws HDF5LibraryException

static synchronized native int	H5error_off ()

static synchronized native void	H5error_on ()

static synchronized native int	H5garbage_collect () throws HDF5LibraryException

static synchronized native int	H5get_libversion (int[] libversion) throws HDF5LibraryException

static synchronized native int	H5set_free_list_limits (int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException

static synchronized native void	H5export_dataset (String file_export_name, long file_id, String object_path, int binary_order) throws HDF5LibraryException

static synchronized native void	H5export_attribute (String file_export_name, long dataset_id, String attribute_name, int binary_order) throws HDF5LibraryException

Variables
static final int	LIB_VERSION [] = {1, 14, 5}

static final String	H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"

static final String	H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"

Function Documentation

◆ getOpenIDCount()

static final int getOpenIDCount ( )

static

Get number of open IDs.

Returns: Returns a count of open IDs

◆ getOpenIDs()

static final Collection< Long > getOpenIDs ( )

static

Get the open IDs

Returns: Returns a collection of open IDs

◆ H5check_version()

static synchronized native int H5check_version	(	int	majnum,
		int	minnum,
		int	relnum
	)

static

H5check_version verifies that the arguments match the version numbers compiled into the library.

Parameters

majnum	The major version of the library.
minnum	The minor version of the library.
relnum	The release number of the library.

Returns: a non-negative value if successful. Upon failure (when the versions do not match), this function causes the application to abort (i.e., crash)

See C API function: herr_t H5check_version(unsigned majnum, unsigned minnum, unsigned relnum)

◆ H5close()

static synchronized native int H5close ( ) throws HDF5LibraryException

static

H5close flushes all data to disk, closes all file identifiers, and cleans up all memory used by the library.

Returns: a non-negative value if successful

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5error_off()

static synchronized native int H5error_off ( )

static

Turn off error handling. By default, the C library prints the error stack of the HDF5 C library on stdout. This behavior may be disabled by calling H5error_off().

Returns: a non-negative value if successful

◆ H5error_on()

static synchronized native void H5error_on ( )

static

Turn on error handling. By default, the C library prints the error stack of the HDF5 C library on stdout. This behavior may be re-enabled by calling H5error_on().

◆ H5export_attribute()

static synchronized native void H5export_attribute	(	String	file_export_name,
		long	dataset_id,
		String	attribute_name,
		int	binary_order
	)		throws HDF5LibraryException

static

H5export_attribute is a utility function to save data in a file.

Parameters

file_export_name	The file name to export data into.
dataset_id	The identifier of the dataset containing the attribute.
attribute_name	The attribute to be exported.
binary_order	99 - export data as text. 1 - export data as binary Native Order. 2 - export data as binary Little Endian. 3 - export data as binary Big Endian.

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5export_dataset()

static synchronized native void H5export_dataset	(	String	file_export_name,
		long	file_id,
		String	object_path,
		int	binary_order
	)		throws HDF5LibraryException

static

H5export_dataset is a utility function to save data in a file.

Parameters

file_export_name	The file name to export data into.
file_id	The identifier of the HDF5 file containing the dataset.
object_path	The full path of the dataset to be exported.
binary_order	99 - export data as text. 1 - export data as binary Native Order. 2 - export data as binary Little Endian. 3 - export data as binary Big Endian.

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5garbage_collect()

static synchronized native int H5garbage_collect ( ) throws HDF5LibraryException

static

H5garbage_collect collects on all free-lists of all types.

Returns: a non-negative value if successful

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5get_libversion()

static synchronized native int H5get_libversion ( int[] libversion ) throws HDF5LibraryException

static

H5get_libversion retrieves the major, minor, and release numbers of the version of the HDF library which is linked to the application.

Parameters

libversion The version information of the HDF library.

     libversion[0] = The major version of the library.
     libversion[1] = The minor version of the library.
     libversion[2] = The release number of the library.

Returns: a non-negative value if successful, along with the version information.

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5open()

static synchronized native int H5open ( ) throws HDF5LibraryException

static

H5open initialize the library.

Returns: a non-negative value if successful

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ H5set_free_list_limits()

static synchronized native int H5set_free_list_limits	(	int	reg_global_lim,
		int	reg_list_lim,
		int	arr_global_lim,
		int	arr_list_lim,
		int	blk_global_lim,
		int	blk_list_lim
	)		throws HDF5LibraryException

static

H5set_free_list_limits Sets limits on the different kinds of free lists. Setting a value of -1 for a limit means no limit of that type. These limits are global for the entire library. Each "global" limit only applies to free lists of that type, so if an application sets a limit of 1 MB on each of the global lists, up to 3 MB of total storage might be allocated (1MB on each of regular, array and block type lists).

The settings for block free lists are duplicated to factory free lists. Factory free list limits cannot be set independently currently.

Parameters

reg_global_lim	The limit on all "regular" free list memory used
reg_list_lim	The limit on memory used in each "regular" free list
arr_global_lim	The limit on all "array" free list memory used
arr_list_lim	The limit on memory used in each "array" free list
blk_global_lim	The limit on all "block" free list memory used
blk_list_lim	The limit on memory used in each "block" free list

Returns: a non-negative value if successful, along with the version information.

Exceptions

HDF5LibraryException Error from the HDF5 Library.

◆ loadH5Lib()

static void loadH5Lib ( )

static

load native library

Variable Documentation

◆ H5_LIBRARY_NAME_PROPERTY_KEY

final String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"

static

add system property to load library by name from library path, via System.loadLibrary()

◆ H5PATH_PROPERTY_KEY

final String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"

static

add system property to load library by path

◆ LIB_VERSION

final int LIB_VERSION[] = {1, 14, 5}

static

The version number of the HDF5 library:

LIB_VERSION[0]: The major version of the library.
LIB_VERSION[1]: The minor version of the library.
LIB_VERSION[2]: The release number of the library.

Make sure to update the versions number when a different library is used.

Detailed Description

Functions

Variables

Function Documentation

◆ getOpenIDCount()

◆ getOpenIDs()

◆ H5check_version()

◆ H5close()

◆ H5error_off()

◆ H5error_on()

◆ H5export_attribute()

◆ H5export_dataset()

◆ H5garbage_collect()

◆ H5get_libversion()

◆ H5open()

◆ H5set_free_list_limits()

◆ loadH5Lib()

Variable Documentation

◆ H5_LIBRARY_NAME_PROPERTY_KEY

◆ H5PATH_PROPERTY_KEY

◆ LIB_VERSION